设置R_LIBS和避免"Would you like to use a personal library instead?"

Question

我的个人库设置为R_LIBS=~/。~/中的R/lib。Renviron。当我从rstudio安装软件包时，这非常有效。当我尝试从纯R控制台会话安装新软件包时，它总是问我：

Would you like to use a personal library instead?  (y/n) y
Would you like to create a personal library
~/R/x86_64-redhat-linux-gnu-library/3.1
to install packages into?  (y/n) n

当我从控制台会话进行更新时，~/中的现有包。R/lib(以前从rstudio安装)更新没有问题。如果/usr/R中有全局包也需要更新，R会再次询问我是否要创建~/R/x86_64-redhat-linux-gnu-library/3.1。

我尝试了很多配置，但都没有找到解决这个问题的方法。

专业提示？

Answer 1

是的，我总是在我使用的系统上取消设置它，我甚至试图将它排除在我维护的Debian包之外。在Debian中，我们使用

/usr/lib/R/library                   for core R packages shipping with R
/usr/lib/R/site-library              for r-cran-* packages from the distro
/usr/local/lib/R/site-library        for what the user installs from CRAN

按照适当的顺序：

R> .libPaths()
[1] "/usr/local/lib/R/site-library" "/usr/lib/R/site-library"   
"/usr/lib/R/library"           
R> 

我通过评论来做到这一点

#R_LIBS_USER=${R_LIBS_USER-'~/R/x86_64-pc-linux-gnu-library/3.1'}
#R_LIBS_USER=${R_LIBS_USER-'~/Library/R/3.1/library'}
# edd Apr 2003  Allow local install in /usr/local, also add a directory for
#               Debian packaged CRAN packages, and finally the default dir 
# edd Jul 2007  Now use R_LIBS_SITE, not R_LIBS
R_LIBS_SITE=${R_LIBS_SITE-'/usr/local/lib/R/site-library:
/usr/lib/R/site-library:/usr/lib/R/library'}

我想我必须更新Debian包中的补丁。。。