Pandas.resample为非整数倍频率



我必须将数据集从10分钟间隔重新采样到15分钟间隔,以使其与另一个数据集同步。根据我在stackoverflow的搜索,我对如何进行有一些想法,但没有一个能提供干净明了的解决方案。

问题

问题设置

#%% Import modules 
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
#%% make timestamps
periods = 12
startdate = '2010-01-01'
timestamp10min = pd.date_range(startdate, freq='10Min', periods=periods)

#%% Make DataFrame and fill it with some data
df = pd.DataFrame(index=timestamp10min)
y = -(np.arange(periods)-periods/2)**2
df['y'] = y 

所需输出

现在,我希望10分钟内的值保持不变,**:15和**:45的值是**:10、**:20和**:40、**:50的平均值。问题的核心是15分钟不是10分钟的整数倍。否则,简单地应用df.resample('10Min', how='mean')就会起作用。

可能的解决方案

  1. 只需使用15分钟的重新采样,就可以接受引入的小误差。

  2. 使用两种形式的重采样,即close='left', label='left'close='right' , label='right'。之后,我可以对两个重新采样的表格进行平均。结果会给我一些误差,但比第一种方法要小。

  3. 将所有数据重新采样为5分钟的数据,然后应用滚动平均值。类似的东西在这里被应用:Pandas:时间间隔的滚动平均值

  4. 使用不同数量的输入进行重新采样和平均:使用numpy.average和权重对Panda数组进行重新采样因此,我必须创建一个具有不同重量长度的新系列。如果重量应该在1和2之间交替。

  5. 将所有数据重新采样为5分钟数据,然后应用线性插值。此方法接近方法3。Pandas数据帧:使用线性插值重新采样编辑:@Paul H给出了一个可行的解决方案,仍然可读。谢谢

对我来说,所有的方法都不是真正的统计。有些方法会导致一个小错误,而其他方法对于局外人来说很难阅读。

实施

方法1、2和5的实现以及期望的输出。与可视化相结合。

#%% start plot
plt.figure()
plt.plot(df.index, df['y'], label='original')
#%% resample the data to 15 minutes and plot the result
close = 'left'; label='left'
dfresamplell = pd.DataFrame()
dfresamplell['15min'] = df.y.resample('15Min', how='mean', closed=close, label=label)
labelstring = 'close ' + close + ' label ' + label        
plt.plot(dfresamplell.index, dfresamplell['15min'], label=labelstring)
        
close = 'right'; label='right'
dfresamplerr = pd.DataFrame()
dfresamplerr['15min'] = df.y.resample('15Min', how='mean', closed=close, label=label)
labelstring = 'close ' + close + ' label ' + label        
plt.plot(dfresamplerr.index, dfresamplerr['15min'], label=labelstring)
#%% make an average
dfresampleaverage = pd.DataFrame(index=dfresamplell.index)
dfresampleaverage['15min'] = (dfresamplell['15min'].values+dfresamplerr['15min'].values[:-1])/2
plt.plot(dfresampleaverage.index, dfresampleaverage['15min'], label='average of both resampling methods')
#%% desired output
ydesired = np.zeros(periods/3*2)
i = 0 
j = 0 
k = 0 
for val in ydesired:
    if i+k==len(y): k=0
    ydesired[j] = np.mean([y[i],y[i+k]]) 
    j+=1
    i+=1
    if k==0: k=1; 
    else: k=0; i+=1
plt.plot(dfresamplell.index, ydesired, label='ydesired')

#%% suggestion of Paul H
dfreindex = df.reindex(pd.date_range(startdate, freq='5T', periods=periods*2))
dfreindex.interpolate(inplace=True)
dfreindex = dfreindex.resample('15T', how='first').head()
plt.plot(dfreindex.index, dfreindex['y'], label='method Paul H')

#%% finalize plot
plt.legend()

角度的实现

作为奖励,我添加了用于角度插值的代码。这是通过使用复数来完成的。由于复数插值尚未实现,我将复数分解为实数和虚数。求平均值后,这些数字可以再次转换为天使。对于某些角度,这是一种比简单地平均两个角度(例如:345度和5度)更好的重新采样方法。

#%% make timestamps
periods = 24*6
startdate = '2010-01-01'
timestamp10min = pd.date_range(startdate, freq='10Min', periods=periods)
#%% Make DataFrame and fill it with some data
degrees = np.cumsum(np.random.randn(periods)*25) % 360
df = pd.DataFrame(index=timestamp10min)
df['deg'] = degrees
df['zreal'] = np.cos(df['deg']*np.pi/180)
df['zimag'] = np.sin(df['deg']*np.pi/180)
#%% suggestion of Paul H
dfreindex = df.reindex(pd.date_range(startdate, freq='5T', periods=periods*2))
dfreindex = dfreindex.interpolate()
dfresample = dfreindex.resample('15T', how='first')
#%% convert complex to degrees
def f(x):    
     return np.angle(x[0] + x[1]*1j, deg=True )
dfresample['degrees'] = dfresample[['zreal', 'zimag']].apply(f, axis=1)
#%% set all the values between 0-360 degrees
dfresample.loc[dfresample['degrees']<0] = 360 + dfresample.loc[dfresample['degrees']<0] 
#%% wrong resampling
dfresample['deg'] = dfresample['deg'] % 360
#%% plot different sampling methods
plt.figure()
plt.plot(df.index, df['deg'], label='normal', marker='v')
plt.plot(dfresample.index, dfresample['degrees'], label='resampled according @Paul H', marker='^')
plt.plot(dfresample.index, dfresample['deg'], label='wrong resampling', marker='<')
plt.legend()

我可能误解了这个问题,但这行得通吗?

TL;DR版本:

import numpy as np
import pandas
data = np.arange(0, 101, 8)
index_10T = pandas.DatetimeIndex(freq='10T', start='2012-01-01 00:00', periods=data.shape[0])
index_05T = pandas.DatetimeIndex(freq='05T', start=index_10T[0], end=index_10T[-1])
index_15T = pandas.DatetimeIndex(freq='15T', start=index_10T[0], end=index_10T[-1])
df1 = pandas.DataFrame(data=data, index=index_10T, columns=['A'])
print(df.reindex(index=index_05T).interpolate().loc[index_15T])

长版本

设置假数据

import numpy as np
import pandas
data = np.arange(0, 101, 8)
index_10T = pandas.DatetimeIndex(freq='10T', start='2012-01-01 00:00', periods=data.shape[0])
df1 = pandas.DataFrame(data=data, index=index_10T, columns=['A'])
print(df1)

                      A
2012-01-01 00:00:00   0
2012-01-01 00:10:00   8
2012-01-01 00:20:00  16
2012-01-01 00:30:00  24
2012-01-01 00:40:00  32
2012-01-01 00:50:00  40
2012-01-01 01:00:00  48
2012-01-01 01:10:00  56
2012-01-01 01:20:00  64
2012-01-01 01:30:00  72
2012-01-01 01:40:00  80
2012-01-01 01:50:00  88
2012-01-01 02:00:00  96

因此,构建一个新的5分钟索引并重新索引原始数据帧

index_05T = pandas.DatetimeIndex(freq='05T', start=index_10T[0], end=index_10T[-1])
df2 = df.reindex(index=index_05T)
print(df2)
                      A
2012-01-01 00:00:00   0
2012-01-01 00:05:00 NaN
2012-01-01 00:10:00   8
2012-01-01 00:15:00 NaN
2012-01-01 00:20:00  16
2012-01-01 00:25:00 NaN
2012-01-01 00:30:00  24
2012-01-01 00:35:00 NaN
2012-01-01 00:40:00  32
2012-01-01 00:45:00 NaN
2012-01-01 00:50:00  40
2012-01-01 00:55:00 NaN
2012-01-01 01:00:00  48
2012-01-01 01:05:00 NaN
2012-01-01 01:10:00  56
2012-01-01 01:15:00 NaN
2012-01-01 01:20:00  64
2012-01-01 01:25:00 NaN
2012-01-01 01:30:00  72
2012-01-01 01:35:00 NaN
2012-01-01 01:40:00  80
2012-01-01 01:45:00 NaN
2012-01-01 01:50:00  88
2012-01-01 01:55:00 NaN
2012-01-01 02:00:00  96

然后线性插值

print(df2.interpolate())
                      A
2012-01-01 00:00:00   0
2012-01-01 00:05:00   4
2012-01-01 00:10:00   8
2012-01-01 00:15:00  12
2012-01-01 00:20:00  16
2012-01-01 00:25:00  20
2012-01-01 00:30:00  24
2012-01-01 00:35:00  28
2012-01-01 00:40:00  32
2012-01-01 00:45:00  36
2012-01-01 00:50:00  40
2012-01-01 00:55:00  44
2012-01-01 01:00:00  48
2012-01-01 01:05:00  52
2012-01-01 01:10:00  56
2012-01-01 01:15:00  60
2012-01-01 01:20:00  64
2012-01-01 01:25:00  68
2012-01-01 01:30:00  72
2012-01-01 01:35:00  76
2012-01-01 01:40:00  80
2012-01-01 01:45:00  84
2012-01-01 01:50:00  88
2012-01-01 01:55:00  92
2012-01-01 02:00:00  96

建立一个15分钟的索引,并使用它提取数据:

index_15T = pandas.DatetimeIndex(freq='15T', start=index_10T[0], end=index_10T[-1])
print(df2.interpolate().loc[index_15T])
                      A
2012-01-01 00:00:00   0
2012-01-01 00:15:00  12
2012-01-01 00:30:00  24
2012-01-01 00:45:00  36
2012-01-01 01:00:00  48
2012-01-01 01:15:00  60
2012-01-01 01:30:00  72
2012-01-01 01:45:00  84
2012-01-01 02:00:00  96

好的,这里有一种方法。

  1. 列出你想填写的时间
  2. 制作一个综合索引,包括你想要的时间和你已经拥有的时间
  3. 获取您的数据并"向前填充"
  4. 获取数据并"反向填充"
  5. 平均向前和向后填充
  6. 仅选择所需的行

请注意,这只适用于您希望的值正好在与现有值之间的一半(按时间)。请注意,最后一次是np.nan,因为您没有任何后续数据。

times_15 = []
current = df.index[0]
while current < df.index[-2]:
    current = current + dt.timedelta(minutes=15)
    times_15.append(current)
combined = set(times_15) | set(df.index)
df = df.reindex(combined).sort_index(axis=0)
df['ff'] = df['y'].fillna(method='ffill')
df['bf'] = df['y'].fillna(method='bfill')
df['solution'] = df[['ff', 'bf']].mean(1)
df.loc[times_15, :]

如果有人处理的数据根本没有规律性,这里有一个由Paul H提供的自适应解决方案。

如果不想在整个时间序列中进行插值,而只想在重新采样有意义的地方进行插值,则可以将插值列并排放置,并以重新采样和dropna结束。

import numpy as np
import pandas
data = np.arange(0, 101, 3)
index_setup = pandas.date_range(freq='01T', start='2022-01-01 00:00',     periods=data.shape[0])
df1 = pandas.DataFrame(data=data, index=index_setup, columns=['A'])
df1 = df1.sample(frac=0.2).sort_index()
print(df1)
                      A
2022-01-01 00:03:00   9
2022-01-01 00:06:00  18
2022-01-01 00:08:00  24
2022-01-01 00:18:00  54
2022-01-01 00:25:00  75
2022-01-01 00:27:00  81
2022-01-01 00:30:00  90

请注意,在没有任何规则性的情况下对该DF进行重新采样将强制值到楼层索引,而不进行插值。

print(df1.resample('05T').mean())
                        A
2022-01-01 00:00:00   9.0
2022-01-01 00:05:00  24.0
2022-01-01 00:10:00  39.0
2022-01-01 00:15:00  51.0
2022-01-01 00:20:00   NaN
2022-01-01 00:25:00  79.5

通过在足够小的间隔内插值,然后重新采样,可以获得更好的解决方案。结果DF现在有太多,但dropna()使其接近其原始形状。

index_1min = pandas.date_range(freq='01T', start='2022-01-01 00:00', end='2022-01-01 23:59')
df2 = df1.reindex(index=index_1min)
df2['A_interp'] = df2['A'].interpolate(limit_direction='both')
print(df2.resample('05T').first().dropna())
                        A  A_interp
2022-01-01 00:00:00   9.0       9.0
2022-01-01 00:05:00  21.0      15.0
2022-01-01 00:10:00  39.0      30.0
2022-01-01 00:15:00  51.0      45.0
2022-01-01 00:25:00  75.0      75.0

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