设计并编写一个可以检测跨膜结构域的程序,称为TMscanner.py
。这个程序应该调用你编写的另外两个函数: getProteinRegion
应该返回一个十个氨基酸窗口(最初抓取氨基酸 1-10,下一次抓取 2-20,依此类推(TMscanner
还应该重复调用名为testForTM
的第二个函数,该函数应计算并返回非极性十个氨基酸的小数部分。非极性氨基酸是 [A,V,L,I,P,M,F,W]
例:
protein = 'AVLIPMFWGSTNQYDEKRH' #Only the first 9 are nonpolar
results = tmScanner(protein)
print "Results are", results
它应该打印出来:
Results are [.8, .7, .6, .5, .4, .3, .2, .1, 0, 0]
-- #Test 代码
def getProteinRegion(protein, start):
#return first 10 aa in protein
return protein[start:start+10]
def testForTM(protein):
#return ratio of nonpolar aa from a sample of first 10; move them up one step and repeat
nonpolar = 0
for aa in getProteinRegion(protein, start):
if aa in ['A', 'V', 'L', 'I', 'P', 'M', 'F', 'W']:
nonpolar = nonpolar + 1.0
return nonpolar / 10.0
def tmSCANNER(protein):
#while the tested in testForTM is less than 10, append testforTM function to results; print results
results = []
start = 0
while start <= 10:
results = results.append(testForTM(protein))
return results
start = start + 1
##TESTING
#print getProteinRegion('AVLIPMFWGSTCNQYDEKRH')
#print testForTM('AVLIPMFW')
print tmSCANNER('AVLIPMFWGSTCNQYDEKRH')
--
Traceback (most recent call last):
File "TMscanner.py", line 29, in <module>
print tmSCANNER('AVLIPMFWGSTCNQYDEKRH')
File "TMscanner.py", line 21, in tmSCANNER
results = results.append(testForTM(protein))
File "TMscanner.py", line 10, in testForTM
for aa in getProteinRegion(protein, start):
NameError: global name 'start' is not defined
你的函数testForTM
不带start
参数,不声明名为start
的局部变量,但它调用getProteinRegion(protein, start)
。因此,Python 假设您必须使用全局变量,但您也没有具有该名称的全局变量。所以它提出了一个例外。
您可能想要的是添加start
作为参数:
def testForTM(protein, start):
然后,在 tmSCANNER
内部的调用代码中,您确实有一个名为 start
的局部变量,这可能是您要作为 start
参数传递的值:
results = results.append(testForTM(protein, start))