如何在 R 中将 NetCDF 文件"NDVI NOAA AVHRR"读取为栅格?



我想用 R 显示 NDVI 参数,然后在每个区域中提取此参数的值。

我的文件是NetCDF(.nc(格式,通过以下链接下载:https://www.ncei.noaa.gov/data/avhrr-land-normalized-difference-vegetation-index/access/1981/

因此,我使用以下代码中的两个包"raster"和"ncdf4"将第一个文件导入R下的"AVHRR-Land_v005_AVH13C1_NOAA-07_19810624_c20170610041337.nc":

library(ncdf4) 
library(raster) 
setwd("path/.../data")
r=raster("AVHRR-Land_v005_AVH13C1_NOAA-07_19810624_c20170610041337.nc",varname="NDVI")

但是当应用我的程序时,我收到此错误:

Error in CRS(as.character(projection(crs))) : 
no arguments in initialization list

我从下面的代码中选择变量的名称("NDVI"(。我认为问题出在坐标系的格式上!

library(ncdf4)    
nc <- nc_open("AVHRR-Land_v005_AVH13C1_NOAA-07_19810624_c20170610041337.nc")
attributes(nc$var)$names

你有解决这个问题的方法吗!

提前谢谢你

我的R版本和我的系统电脑:

R version 3.6.2 (2019-12-12)
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

编辑

谢谢罗伯特·希曼斯的回答(下面的答案(。

我更新了软件包(更新某些软件包时出现错误消息(

update.packages(ask=F)
Warning: package 'BH' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'callr' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'cli' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'DT' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'fansi' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'farver' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'gh' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'mime' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'pillar' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'plyr' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'prettyunits' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'stringi' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'vctrs' in library '/usr/local/lib/R/site-library' will not be updated
Warning: package 'foreign' in library '/usr/lib/R/library' will not be updated

并应用了您的代码,但我仍然收到相同的错误。

r <- raster(f, varname="NDVI")
Error in CRS(as.character(projection(crs))) : 
no arguments in initialization list.   

traceback()
No traceback available .  

sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS
Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
locale:
[1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C               LC_TIME=en_GB.UTF-8       
[4] LC_COLLATE=en_GB.UTF-8     LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
[7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     
other attached packages:
[1] ncdf4_1.17   raster_3.0-7 sp_1.3-2    
loaded via a namespace (and not attached):
[1] compiler_3.6.2   rgdal_1.4-8      tools_3.6.2      yaml_2.2.0       Rcpp_1.0.3       codetools_0.2-16
[7] grid_3.6.2       lattice_0.20-38 

下载文件

url <- "https://www.ncei.noaa.gov/data/avhrr-land-normalized-difference-vegetation-index/access/1981/"
f <- "AVHRR-Land_v005_AVH13C1_NOAA-07_19810624_c20170610041337.nc"
if (!file.exists(f)) download.file(file.path(url, f), f, mode="wb")

使用 R 3.6.2 和更新的软件包,我得到:

library(raster)
#Loading required package: sp
r <- raster(f, varname="NDVI")
#Loading required namespace: ncdf4
r
#class      : RasterLayer 
#dimensions : 3600, 7200, 25920000  (nrow, ncol, ncell)
#resolution : 0.05, 0.05  (x, y)
#extent     : -180, 180, -89.99999, 90  (xmin, xmax, ymin, ymax)
#crs        : +init=EPSG:4326 +proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0 
#source     : AVHRR-Land_v005_AVH13C1_NOAA-07_19810624_c20170610041337.nc 
#names      : NOAA.Climate.Data.Record.of.Normalized.Difference.Vegetation.Index 
#z-value    : 1981-06-24 
#zvar       : NDVI 

你能update.packages(ask=F)运行并重试吗?如果仍然失败,您能否显示错误发生后的traceback()以及您的sessionInfo()

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