r语言 - 扫帚包 - lm.fit(x, y, offset = offset, singular.ok = singul



我有一个学生属性和考试成绩的数据框,我正在尝试为每个年级(1 到 12(拟合一个线性模型。我正在使用扫帚包有效地为每个年级创建一个模型。下面是一个简化的示例数据集和我正在使用的代码。

#start df creation 
grade <- rep(1:12, each = 40)
attendance_rate <- round(runif(480, min=25, max=100), 1)
test_growth <- round(runif(480, min = -12, max = 38))
binary_flag <- round(runif(480, min = 0, max = 1))
score <- round(runif(480, min = 92, max = 370))
survey_response <- round(runif(480, min = 1, max = 4))
df <- data.frame(grade, attendance_rate, test_growth, binary_flag, score, survey_response) 
df$survey_response[df$grade == 1] <- NA
# end df creation
#create train test split for each grade level
set.seed(123)
df_train <- lapply(split(seq(1:nrow(df)), df$grade), function(x) sample(x, floor(.6*length(x))))
df_test <- mapply(function(x,y) setdiff(x,y), x = split(seq(1:nrow(df)), df$grade), y = df_train)
df_train <- df[unlist(df_train),]
df_test <- df[unlist(df_test),]

#create models
models_nested <- df_train %>%
group_by(grade) %>% nest() %>% 
mutate(
fit = map(data, ~ lm(score ~ attendance_rate + test_growth + binary_flag + survey_response, data = .x)),
tidied = map(fit, tidy),
augmented = map(fit, augment),
glanced = map(fit, glance)
)

不幸的是,当我尝试运行以 models_nested 开头的代码块时,我收到以下错误:

Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
0 (non-NA) cases

我知道这种情况正在发生,因为一年级的所有学生在survey_response列中都有一个 NA 值。我不知道如何在不对一年级运行单独的回归以完全删除调查响应列/变量的情况下解决此问题。有没有办法告诉 lm 函数简单地忽略一个变量,如果该特定等级子集只包含空值?我显然希望在其他年级模型的回归中保留该变量。

我尽力使这个问题变得清晰,但如有必要,我很乐意在评论中澄清。

编辑 6/9/2020:我不想为一年级模型返回 NA,我只想让一年级的线性模型在没有survey_response列的情况下运行。我希望survey_response列包含在所有其他年级模型中。

希望有人能帮忙!

我们可以在survey_response中检查NA值并相应地使用该模型。

library(broom)
library(dplyr)
library(tidyr)
library(purrr)
df_train %>%
group_by(grade) %>% 
nest() %>% 
mutate(fit = map(data, ~ if(all(is.na(.x$survey_response)))
lm(score ~ attendance_rate + test_growth + binary_flag, data = .x) 
else lm(score ~ attendance_rate + test_growth + binary_flag + survey_response, data = .x)),
tidied = map(fit, tidy),
augmented = map(fit, augment),
glanced = map(fit, glance))

#   grade data              fit    tidied           augmented          glanced          
#   <int> <list>            <list> <list>           <list>             <list>           
# 1     1 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 2     2 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 3     3 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 4     4 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 5     5 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 6     6 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 7     7 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 8     8 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
# 9     9 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
#10    10 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
#11    11 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>
#12    12 <tibble [24 × 5]> <lm>   <tibble [4 × 5]> <tibble [24 × 11]> <tibble [1 × 11]>

我们可以使用purrr中的possibly

library(broom)
library(dplyr)
library(tidyr)
library(purrr)
poslm <- possibly(lm, otherwise = NA)
df_train %>%
group_by(grade) %>% 
nest() %>% 
mutate(fit = map(data, ~ poslm(score ~ attendance_rate + test_growth + 
binary_flag + survey_response, data = .x)), 
tidied = map(fit, possibly(tidy, otherwise = NA)),
augmented = map(fit, possibly(augment, otherwise = NA)),
glanced = map(fit, possibly(glance, otherwise = NA)))
# A tibble: 12 x 6
# Groups:   grade [12]
#   grade data              fit       tidied           augmented          glanced          
#   <int> <list>            <list>    <list>           <list>             <list>           
# 1     1 <tibble [24 × 5]> <lgl [1]> <lgl [1]>        <lgl [1]>          <lgl [1]>        
# 2     2 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
# 3     3 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
# 4     4 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
# 5     5 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
# 6     6 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
# 7     7 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
# 8     8 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
# 9     9 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
#10    10 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
#11    11 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>
#12    12 <tibble [24 × 5]> <lm>      <tibble [5 × 5]> <tibble [24 × 12]> <tibble [1 × 11]>

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