考虑互联网上的一个文件(比如这个(注意https中的s)https://evs.nci.nih.gov/ftp1/CDISC/SDTM/SDTM%20Terminology.xls
如何将文件的工作表 2 读入 R?
以下代码是所需代码的近似值(但失败)
url1<-'https://evs.nci.nih.gov/ftp1/CDISC/SDTM/SDTM%20Terminology.xls'
p1f <- tempfile()
download.file(url1, p1f, mode="wb")
p1<-read_excel(path = p1f, sheet = 2)
这在Windows上对我有用:
library(readxl)
library(httr)
packageVersion("readxl")
# [1] ‘0.1.1’
GET(url1, write_disk(tf <- tempfile(fileext = ".xls")))
df <- read_excel(tf, 2L)
str(df)
# Classes ‘tbl_df’, ‘tbl’ and 'data.frame': 20131 obs. of 8 variables:
# $ Code : chr "C115388" "C115800" "C115801" "C115802" ...
# $ Codelist Code : chr NA "C115388" "C115388" "C115388" ...
# $ Codelist Extensible (Yes/No): chr "No" NA NA NA ...
# $ Codelist Name : chr "6 Minute Walk Functional Test Test Code" "6 Minute Walk Functional Test Test Code" "6 Minute Walk Functional Test Test Code" "6 Minute Walk Functional Test Test Code" ...
# $ CDISC Submission Value : chr "SIXMW1TC" "SIXMW101" "SIXMW102" "SIXMW103" ...
# $ CDISC Synonym(s) : chr "6 Minute Walk Functional Test Test Code" "SIXMW1-Distance at 1 Minute" "SIXMW1-Distance at 2 Minutes" "SIXMW1-Distance at 3 Minutes" ...
# $ CDISC Definition : chr "6 Minute Walk Test test code." "6 Minute Walk Test - Distance at 1 minute." "6 Minute Walk Test - Distance at 2 minutes." "6 Minute Walk Test - Distance at 3 minutes." ...
# $ NCI Preferred Term : chr "CDISC Functional Test 6MWT Test Code Terminology" "6MWT - Distance at 1 Minute" "6MWT - Distance at 2 Minutes" "6MWT - Distance at 3 Minutes" ...
一个更简单的解决方案是使用openxlsx 包。下面是一个示例,可以根据您的需求进行调整:
library(openxlsx)
df = read.xlsx("https://archive.ics.uci.edu/ml/machine-learning-databases/00242/ENB2012_data.xlsx",sheet=1)
从 Github 上的这个问题 (#278):
一些支持更通用输入的功能将从读取器中提取,此时 ReadXL 可以利用这一点。
因此,我们应该能够在(希望不久的)将来将URL直接传递给read_excel()
。
使用rio
R 包。 链接。这里有一个代表:
library(tidyverse)
library(rio)
url <- 'https://evs.nci.nih.gov/ftp1/CDISC/SDTM/SDTM%20Terminology.xls'
rio::import(file = url,which = 2) %>%
glimpse()
#>
#> Rows: 30,995
#> Columns: 8
#> $ Code <chr> "C141663", "C141706", "C141707"...
#> $ `Codelist Code` <chr> NA, "C141663", "C141663", "C141...
#> $ `Codelist Extensible (Yes/No)` <chr> "No", NA, NA, NA, "No", NA, NA,...
#> $ `Codelist Name` <chr> "4 Stair Ascend Functional Test...
#> $ `CDISC Submission Value` <chr> "A4STR1TC", "A4STR101", "A4STR1...
#> $ `CDISC Synonym(s)` <chr> "4 Stair Ascend Functional Test...
#> $ `CDISC Definition` <chr> "4 Stair Ascend test code.", "4...
#> $ `NCI Preferred Term` <chr> "CDISC Functional Test 4 Stair ...