如何使用张量流实现多类语义分割



我正在尝试使用tensorflow和tflearn或Keras执行多类语义分割(我尝试了两个API(。与这里类似的问题(如何在 Keras 中加载图像掩码(标签(以进行图像分割(

我必须用 3 个不同的类别分割图像的不同部分:海(0 级(、船(1 级(、天空(2 级(。

我有 100 张灰度图像(尺寸 400x400(。对于每个图像,我都有 3 个类的相应标签。最后,我有形状(100,400,400(的图像和形状(100,400,400,3(的标签。(如这里解释的:如何实现多类语义分割?

为了能够使用语义分割,我使用了一种热编码(如这里:https://www.jeremyjordan.me/semantic-segmentation/(,最终得到这个:

train_images.shape: (100,400,400,1)
train_labels.shape: (100,400,400,3)

其中标签如下:海 [1,0,0];船 [0,1,0],天空 [0,0,1]

但是,每次我尝试训练时都会收到此错误:

ValueError: Cannot feed value of shape (22, 240, 240, 3) for Tensor 'TargetsData/Y:0', which has shape '(?, 240, 240, 2)'

我用这个加载模型:

model = TheNet(input_shape=(None, 400, 40, 1))

编辑:这是我使用的模型

  • 使用 TFlearn:

    def TheNet(input_size = (80, 400, 400, 2), feature_map=8, kernel_size=5, keep_rate=0.8, lr=0.001, log_dir ="logs",savedir="Results/Session_Dump"):
    
    # level 0 input
    layer_0a_input  = tflearn.layers.core.input_data(input_size) #shape=[None,n1,n2,n3,1])
    # level 1 down
    layer_1a_conv   = tflearn_conv_2d(net=layer_0a_input, nb_filter=feature_map, kernel=5, stride=1, activation=False)
    layer_1a_stack  = tflearn_merge_2d([layer_0a_input]*feature_map, "concat")
    layer_1a_stack  = tflearn.activations.prelu(layer_1a_stack)
    layer_1a_add    = tflearn_merge_2d([layer_1a_conv,layer_1a_stack], "elemwise_sum")
    layer_1a_down   = tflearn_conv_2d(net=layer_1a_add, nb_filter=feature_map*2, kernel=2, stride=2, dropout=keep_rate)
    # level 2 down
    layer_2a_conv   = tflearn_conv_2d(net=layer_1a_down, nb_filter=feature_map*2, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_2a_conv   = tflearn_conv_2d(net=layer_2a_conv, nb_filter=feature_map*2, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_2a_add    = tflearn_merge_2d([layer_1a_down,layer_2a_conv], "elemwise_sum")
    layer_2a_down   = tflearn_conv_2d(net=layer_2a_add, nb_filter=feature_map*4, kernel=2, stride=2, dropout=keep_rate)
    # level 3 down
    layer_3a_conv   = tflearn_conv_2d(net=layer_2a_down, nb_filter=feature_map*4, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_3a_conv   = tflearn_conv_2d(net=layer_3a_conv, nb_filter=feature_map*4, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_3a_conv   = tflearn_conv_2d(net=layer_3a_conv, nb_filter=feature_map*4, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_3a_add    = tflearn_merge_2d([layer_2a_down,layer_3a_conv], "elemwise_sum")
    layer_3a_down   = tflearn_conv_2d(net=layer_3a_add, nb_filter=feature_map*8, kernel=2, stride=2, dropout=keep_rate)
    # level 4 down
    layer_4a_conv   = tflearn_conv_2d(net=layer_3a_down, nb_filter=feature_map*8, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_4a_conv   = tflearn_conv_2d(net=layer_4a_conv, nb_filter=feature_map*8, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_4a_conv   = tflearn_conv_2d(net=layer_4a_conv, nb_filter=feature_map*8, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_4a_add    = tflearn_merge_2d([layer_3a_down,layer_4a_conv], "elemwise_sum")
    layer_4a_down   = tflearn_conv_2d(net=layer_4a_add, nb_filter=feature_map*16,kernel=2,stride=2,dropout=keep_rate)
    # level 5
    layer_5a_conv   = tflearn_conv_2d(net=layer_4a_down, nb_filter=feature_map*16, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_5a_conv   = tflearn_conv_2d(net=layer_5a_conv, nb_filter=feature_map*16, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_5a_conv   = tflearn_conv_2d(net=layer_5a_conv, nb_filter=feature_map*16, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_5a_add    = tflearn_merge_2d([layer_4a_down,layer_5a_conv], "elemwise_sum")
    layer_5a_up     = tflearn_deconv_2d(net=layer_5a_add, nb_filter=feature_map*8, kernel=2, stride=2, dropout=keep_rate)
    # level 4 up
    layer_4b_concat = tflearn_merge_2d([layer_4a_add,layer_5a_up], "concat")
    layer_4b_conv   = tflearn_conv_2d(net=layer_4b_concat, nb_filter=feature_map*16, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_4b_conv   = tflearn_conv_2d(net=layer_4b_conv, nb_filter=feature_map*16, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_4b_conv   = tflearn_conv_2d(net=layer_4b_conv, nb_filter=feature_map*16, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_4b_add    = tflearn_merge_2d([layer_4b_conv,layer_4b_concat], "elemwise_sum")
    layer_4b_up     = tflearn_deconv_2d(net=layer_4b_add, nb_filter=feature_map*4, kernel=2, stride=2, dropout=keep_rate)
    # level 3 up
    layer_3b_concat = tflearn_merge_2d([layer_3a_add,layer_4b_up], "concat")
    layer_3b_conv   = tflearn_conv_2d(net=layer_3b_concat, nb_filter=feature_map*8, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_3b_conv   = tflearn_conv_2d(net=layer_3b_conv, nb_filter=feature_map*8, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_3b_conv   = tflearn_conv_2d(net=layer_3b_conv, nb_filter=feature_map*8, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_3b_add    = tflearn_merge_2d([layer_3b_conv,layer_3b_concat], "elemwise_sum")
    layer_3b_up     = tflearn_deconv_2d(net=layer_3b_add, nb_filter=feature_map*2, kernel=2, stride=2, dropout=keep_rate)
    # level 2 up
    layer_2b_concat = tflearn_merge_2d([layer_2a_add,layer_3b_up], "concat")
    layer_2b_conv   = tflearn_conv_2d(net=layer_2b_concat, nb_filter=feature_map*4, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_2b_conv   = tflearn_conv_2d(net=layer_2b_conv, nb_filter=feature_map*4, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_2b_add    = tflearn_merge_2d([layer_2b_conv,layer_2b_concat], "elemwise_sum")
    layer_2b_up     = tflearn_deconv_2d(net=layer_2b_add, nb_filter=feature_map, kernel=2, stride=2, dropout=keep_rate)
    # level 1 up
    layer_1b_concat = tflearn_merge_2d([layer_1a_add,layer_2b_up], "concat")
    layer_1b_conv   = tflearn_conv_2d(net=layer_1b_concat, nb_filter=feature_map*2, kernel=kernel_size, stride=1, dropout=keep_rate)
    layer_1b_add    = tflearn_merge_2d([layer_1b_conv,layer_1b_concat], "elemwise_sum")
    # level 0 classifier
    layer_0b_conv   = tflearn_conv_2d(net=layer_1b_add, nb_filter=2, kernel=5, stride=1, dropout=keep_rate)
    layer_0b_clf    = tflearn.layers.conv.conv_2d(layer_0b_conv, 2, 1, 1, activation="softmax")
    # Optimizer
    regress = tflearn.layers.estimator.regression(layer_0b_clf, optimizer='adam', loss=dice_loss_2d, learning_rate=lr) # categorical_crossentropy/dice_loss_3d
    model   = tflearn.models.dnn.DNN(regress, tensorboard_dir=log_dir)
    # Saving the model
    if not os.path.lexists(savedir+"weights"):
    os.makedirs(savedir+"weights")
    model.save(savedir+"weights/weights_session")
    return model
    
  • 使用Keras:

    def TheNet(input_shape, nb_kernel, kernel_size, dropout, lr, log_dir ="logs",savedir="Results/Session_Dump"):
    layer_0 = keras.Input(shape = input_shape)
    #LVL 1 Down
    layer_1_conv = Cust_2D_Conv(layer_0, nb_kernel, kernel_size, stride=1)
    layer_1_stak = keras.layers.concatenate([layer_0,layer_0,layer_0,layer_0,layer_0,layer_0,layer_0,layer_0])
    layer_1_stak = keras.layers.PReLU()(layer_1_stak)
    layer_1_addd = keras.layers.Multiply()([layer_1_conv,layer_1_stak])
    layer_1_down = Cust_2D_Conv(layer_1_addd, nb_kernel=nb_kernel*2, kernel_size=3, stride=2, dropout=0.2)
    #LVL 2 Down
    layer_2_conv = Cust_2D_Conv(layer_1_down, nb_kernel=nb_kernel*2, kernel_size=5, stride=1, dropout=0.2)
    layer_2_conv = Cust_2D_Conv(layer_2_conv, nb_kernel=nb_kernel*2, kernel_size=5, stride=1, dropout=0.2)
    layer_2_addd = keras.layers.Multiply()([layer_2_conv,layer_1_down])
    layer_2_down = Cust_2D_Conv(layer_2_addd, nb_kernel=nb_kernel*4, kernel_size=3, stride=2, dropout=0.2)  
    #LVL 3 Down
    layer_3_conv = Cust_2D_Conv(layer_2_down, nb_kernel=nb_kernel*4, kernel_size=5, stride=1, dropout=0.2)
    layer_3_conv = Cust_2D_Conv(layer_3_conv, nb_kernel=nb_kernel*4, kernel_size=5, stride=1, dropout=0.2)
    layer_3_conv = Cust_2D_Conv(layer_3_conv, nb_kernel=nb_kernel*4, kernel_size=5, stride=1, dropout=0.2)
    layer_3_addd = keras.layers.Multiply()([layer_3_conv,layer_2_down])
    layer_3_down = Cust_2D_Conv(layer_3_addd, nb_kernel=nb_kernel*8, kernel_size=3, stride=2, dropout=0.2)
    #LVL 4 Down
    layer_4_conv = Cust_2D_Conv(layer_3_down, nb_kernel=nb_kernel*8, kernel_size=5, stride=1, dropout=0.2)
    layer_4_conv = Cust_2D_Conv(layer_4_conv, nb_kernel=nb_kernel*8, kernel_size=5, stride=1, dropout=0.2)
    layer_4_conv = Cust_2D_Conv(layer_4_conv, nb_kernel=nb_kernel*8, kernel_size=5, stride=1, dropout=0.2)
    layer_4_addd = keras.layers.Multiply()([layer_4_conv,layer_3_down])
    layer_4_down = Cust_2D_Conv(layer_4_addd, nb_kernel=nb_kernel*16, kernel_size=3, stride=2, dropout=0.2)
    #LVL 5 Down
    layer_5_conv = Cust_2D_Conv(layer_4_down, nb_kernel=nb_kernel*16, kernel_size=5, stride=1, dropout=0.2)
    layer_5_conv = Cust_2D_Conv(layer_5_conv, nb_kernel=nb_kernel*16, kernel_size=5, stride=1, dropout=0.2)
    layer_5_conv = Cust_2D_Conv(layer_5_conv, nb_kernel=nb_kernel*16, kernel_size=5, stride=1, dropout=0.2)
    layer_5_addd = keras.layers.Multiply()([layer_5_conv,layer_4_down])
    layer_5_up = Cust_2D_DeConv(layer_5_addd, nb_kernel=nb_kernel*8, kernel_size=3, stride=2, dropout=0.2)
    #LVL 4 Up
    layer_4b_concat = keras.layers.concatenate([layer_5_up, layer_4_addd])
    layer_4b_conv = Cust_2D_Conv(layer_4b_concat, nb_kernel=nb_kernel*16, kernel_size=5, stride=1, dropout=0.2)
    layer_4b_conv = Cust_2D_Conv(layer_4b_conv, nb_kernel=nb_kernel*16, kernel_size=5, stride=1, dropout=0.2)
    layer_4b_conv = Cust_2D_Conv(layer_4b_conv, nb_kernel=nb_kernel*16, kernel_size=5, stride=1, dropout=0.2)
    layer_4b_addd = keras.layers.Multiply()([layer_4b_conv,layer_4b_concat])
    layer_4b_up = Cust_2D_DeConv(layer_4b_addd, nb_kernel=nb_kernel*4, kernel_size=3, stride=2, dropout=0.2)
    #LVL 3 Up
    layer_3b_concat = keras.layers.concatenate([layer_4b_up, layer_3_addd])
    layer_3b_conv = Cust_2D_Conv(layer_3b_concat, nb_kernel=nb_kernel*8, kernel_size=5, stride=1, dropout=0.2)
    layer_3b_conv = Cust_2D_Conv(layer_3b_conv, nb_kernel=nb_kernel*8, kernel_size=5, stride=1, dropout=0.2)
    layer_3b_conv = Cust_2D_Conv(layer_3b_conv, nb_kernel=nb_kernel*8, kernel_size=5, stride=1, dropout=0.2)
    layer_3b_addd = keras.layers.Multiply()([layer_3b_conv,layer_3b_concat])
    layer_3b_up = Cust_2D_DeConv(layer_3b_addd, nb_kernel=nb_kernel*2, kernel_size=3, stride=2, dropout=0.2)
    #LVL 2 Up
    layer_2b_concat = keras.layers.concatenate([layer_3b_up, layer_2_addd])
    layer_2b_conv = Cust_2D_Conv(layer_2b_concat, nb_kernel=nb_kernel*4, kernel_size=5, stride=1, dropout=0.2)
    layer_2b_conv = Cust_2D_Conv(layer_2b_conv, nb_kernel=nb_kernel*4, kernel_size=5, stride=1, dropout=0.2)
    layer_2b_addd = keras.layers.Multiply()([layer_2b_conv,layer_2b_concat])
    layer_2b_up = Cust_2D_DeConv(layer_2b_addd, nb_kernel=nb_kernel, kernel_size=3, stride=2, dropout=0.2)
    #LVL 1 Up
    layer_1b_concat = keras.layers.concatenate([layer_2b_up, layer_1_addd])
    layer_1b_conv = Cust_2D_Conv(layer_1b_concat, nb_kernel=nb_kernel*2, kernel_size=5, stride=1, dropout=0.2)
    layer_1b_addd = keras.layers.Multiply()([layer_1b_conv,layer_1b_concat])
    #LVL 0
    layer_0b_conv = Cust_2D_Conv(layer_1b_addd, nb_kernel=2, kernel_size=5, stride=1, dropout=0.2)
    layer_0b_clf= keras.layers.Conv2D(2, 1, 1, activation="softmax")(layer_0b_conv)
    model = keras.Model(inputs=layer_0, outputs=layer_0b_clf, name='Keras_model')
    model.compile(loss=dice_loss_2d,
    optimizer=keras.optimizers.Adam(),
    metrics=['accuracy','categorical_accuracy'])
    return model
    

我一直在寻找解决方案,但没有什么是很清楚的。

有人有想法或建议吗?

可能面临同样问题的人,我找到了解决方案

问题不在于输入形状。对于输入图像和标签,输入形状必须分别为 (100, 400, 400, 1( 和 (100, 400, 400, 3(。

但是,问题在于模型和模型的输出形状必须与模型的输入相匹配。在原始帖子中显示的代码中,输出形状直接由以下行生成:

layer_0b_clf    = tflearn.layers.conv.conv_2d(layer_0b_conv, 2, 1, 1, activation="softmax")

这将产生输出形状 (?,400,400,2(,因此与用于评估的标签形状不匹配(即 (100, 400, 400, 3(。解决方案是改变模型的输出通道数量,例如:

- 对于TFlearn:conv_2d(layer_0b_conv,3,1,1,激活="softmax"(

layer_0b_clf    = tflearn.layers.conv.conv_2d(layer_0b_conv, 3, 1, 1, activation="softmax")

- 对于 Keras: Conv2D(3, 1, 1, activation="softmax"(

layer_0b_clf= keras.layers.Conv2D(3, 1, 1, activation="softmax")(layer_0b_conv)

希望它能帮助某人。

感谢您的评论和阅读。

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