下面的awk
生成具有所有行split
的current output
。然而,第一行似乎有一个空格,我似乎不明白为什么。不确定这是否是最好的方法,但它会产生接近正确的输出。谢谢:)。
awk
awk '{split($6,a,":"); print $1":",$2,$3,a[1],a[2],a[6],a[7]} {split($7,a,":"); print $1":"$2,$3,a[1],a[2],a[6],a[7]} {split($8,a,":"); print $1":"$2,$3,a[1],a[2],a[6],a[7]} {split($9,a,":"); print $1":"$2,$3,a[1],a[2],a[6],a[7]} {split($10,a,":"); print $1":"$2,$3,a[1],a[2],a[6],a[7]}' input > parse
输入文件(制表符分隔)
chr1 13408 C 1 =:0:0.00:0.00:0.00:0:0:0.00:0.00:0.00:0:0.00:0.00:0.00 A:0:0.00:0.00:0.00:0:0:0.00:0.00:0.00:0:0.00:0.00:0.00 C:1:2.00:28.00:2.00:0:1:0.00:0.02:0.00:0:0.00:0.00:0.00 G:0:0.00:0.00:0.00:0:0:0.00:0.00:0.00:0:0.00:0.00:0.00 T:0:0.00:0.00:0.00:0:0:0.00:0.00:0.00:0:0.00:0.00:0.00 N:0:0.00:0.00:0.00:0:0:0.00:0.00:0.00:0:0.00:0.00:0.00
当前输出(解析)
chr1: 13408 C A 0 0 0 (has a space between `chr1:` and `13408`)
chr1:13408 C C 1 0 1
chr1:13408 C G 0 0 0
chr1:13408 C T 0 0 0
chr1:13408 C N 0 0 0
所需输出
chr1:13408 C A 0 0 0 (has no space between `chr1:` and `13408`)
chr1:13408 C C 1 0 1
chr1:13408 C G 0 0 0
chr1:13408 C T 0 0 0
chr1:13408 C N 0 0 0
您告诉awk在您的第一个print语句中使用第一个,
打印空间。更改
print $1":",$2
至
print $1":"$2
就像您在第二个print语句中已经有的一样,所以您不会在:
和$2
之间打印OFS
值(默认情况下是一个空格)。