错误 gene_ontology函数的未使用参数

Question

>我正在尝试在R中进行基因本体分析，但出现此错误;

Error in get_ontology(x, name = paste("Cluster", names(df.list[i]), "Pathways_for_kmeans_cluster",  : 
unused argument (name = paste("Cluster", names(df.list[i]), "Pathways_for_kmeans_cluster", j, sep = "_"))

运行此脚本后：

numclus <- sort(unique(df.list[[i]]$kmeans.cluster))
subdirname <- paste("D:/Master jaar 1/RP1/RP1 projects/Aged macrophage characterisation/Single cell sequencing/nieuwe stuff", "/top100_genes_from_", names(df.list[i]), "_pathways_from_kmeans_clusters", sep = " ")
dir.create(subdirname, showWarnings = FALSE)
install.packages("ontologyPlot")

for (j in numclus){
x <- data.frame(gene = rownames(df.list[[i]][which(df.list[[i]]$kmeans.cluster == j),]), avg_logFC = 0)}
if(nrow(x)>10){
get_ontology(x, name = paste("Cluster", names(df.list[i]), "Pathways_for_kmeans_cluster", j, sep = "_"), return.data = F, outdir = subdirname, full_GSEA = F)
}
}

我在带有get_ontology的行之后收到错误

Answer 1

它告诉你get_ontology没有一个名为name的参数。 您还没有告诉我们您正在使用哪些软件包，所以我无法进一步帮助您，但您可能会通过在线帮助来获得某个地方。