Rmarkdown 目录链接(文档内部)不起作用



当我创建一个包含目录的html Rmarkdown时,只要html文件在我的驱动器上,链接就会起作用。一旦我发布或共享它,链接就会断开,因为它们被硬编码到我驱动器上的文档。有没有办法解决这个问题?例如,具有具有相对路径的链接。

例:

---
title: "TOC test"
author: "Me"
date: "January 18, 2018"
output: 
  html_document:
    toc: true
    toc_depth: 4
---
###Header1 {#Header1}  
some text here
###Header2 {#Header2}  
some more text here
####Header2b {#Header2b}
and more text here

我的链接地址如下所示:

file:///C:/Data/PROJECTS/Testing/TOCtest.html#header1

更新:包括 Rmd

---
title: "###**Weekly Update**"
author: "#####Author"
date: "#####Report Date: `r Sys.Date()`  "
output: 
  html_document:
    toc: yes
    toc_depth: 5
---
#### **MY FIRST HEADER**  
This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see <http://rmarkdown.rstudio.com>.
##### **MY FIRST SUB-HEADER**  
When you click the **Knit** button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:
```{r cars}
summary(cars)
```
#### **MY SECOND HEADER**  
You can also embed plots, for example:

##### **MY SECOND SUB-HEADER**  
Note that the `echo = FALSE` parameter was added to the code chunk to prevent printing of the R code that generated the plot.

更新:包括html

<!DOCTYPE html>
<!-- saved from url=(0088)file:///C:/Data/PROJECTS/TestLinks.html -->
<html xmlns="http://www.w3.org/1999/xhtml"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta name="generator" content="pandoc">
<title></title>
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<meta name="viewport" content="width=device-width, initial-scale=1">
<link href="data:text/css;charset=utf-8,html%7Bfont%2Dfamily%3Asans%2Dserif%3B%2Dwebkit%2Dtext%2Dsize%2Dadjust%3A100%25%3B%2Dms%2Dtex
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<link href="data:text/css;charset=utf-8,%2Ehljs%2Dliteral%20%7B%0Acolor%3A%20%23990073%3B%0A%7D%0A%2Ehljs%2Dnumber%20%7B%0Acolor%3A%2
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<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
  pre:not([class]) {
    background-color: white;
  }
</style>
<script type="text/javascript">
if (window.hljs) {
  hljs.configure({languages: []});
  hljs.initHighlightingOnLoad();
  if (document.readyState && document.readyState === "complete") {
    window.setTimeout(function() { hljs.initHighlightingOnLoad(); }, 0);
  }
}
</script>
<style type="text/css">
h1 {
  font-size: 34px;
}
h1.title {
  font-size: 38px;
}
h2 {
  font-size: 30px;
}
h3 {
  font-size: 24px;
}
h4 {
  font-size: 18px;
}
h5 {
  font-size: 16px;
}
h6 {
  font-size: 12px;
}
.table th:not([align]) {
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}
</style>

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<body><div id="MathJax_Message" style="display: none;"></div>
<style type="text/css">
.main-container {
  max-width: 940px;
  margin-left: auto;
  margin-right: auto;
}
code {
  color: inherit;
  background-color: rgba(0, 0, 0, 0.04);
}
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  height: auto;
}
.tabbed-pane {
  padding-top: 12px;
}
button.code-folding-btn:focus {
  outline: none;
}
</style>

<div class="container-fluid main-container">
<!-- tabsets -->
<script>
$(document).ready(function () {
  window.buildTabsets("TOC");
});
</script>
<!-- code folding -->
<div class="fluid-row" id="header">
<h1 class="title toc-ignore"></h1><h3 id="weekly-update"><strong>Weekly Update</strong></h3>
<h4 class="author"><em><h5 id="author">Author</h5></em></h4>
<h4 class="date"><em><h5 id="report-date-2018-02-02">Report Date: 2018-02-02</h5></em></h4>
</div>
<div id="TOC">
<ul>
<li><a href="file:///C:/Data/PROJECTS/TestLinks.html#my-first-header"><strong>MY FIR
<li><a href="file:///C:/Data/PROJECTS/TestLinks.html#my-first-sub-header"><strong>MY
</ul></li>
<li><a href="file:///C:/Data/PROJECTS/TestLinks.html#my-second-header"><strong>MY SE
<li><a href="file:///C:/Data/PROJECTS/TestLinks.html#my-second-sub-header"><strong>M
</ul></li>
</ul>
</div>
<div id="my-first-header" class="section level4">
<h4><strong>MY FIRST HEADER</strong></h4>
<p>This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more de
<div id="my-first-sub-header" class="section level5">
<h5><strong>MY FIRST SUB-HEADER</strong></h5>
<p>When you click the <strong>Knit</strong> button a document will be generated that includes both content as well as the output of a
<pre class="r"><code class="hljs">summary(cars)</code></pre>
<pre><code class="hljs">##      speed           dist       
##  Min.   : 4.0   Min.   :  2.00  
##  1st Qu.:12.0   1st Qu.: 26.00  
##  Median :15.0   Median : 36.00  
##  Mean   :15.4   Mean   : 42.98  
##  3rd Qu.:19.0   3rd Qu.: 56.00  
##  Max.   :25.0   Max.   :120.00</code></pre>
</div>
</div>
<div id="my-second-header" class="section level4">
<h4><strong>MY SECOND HEADER</strong></h4>
<p>You can also embed plots, for example:</p>
<div id="my-second-sub-header" class="section level5">
<h5><strong>MY SECOND SUB-HEADER</strong></h5>
<p>Note that the <code>echo = FALSE</code> parameter was added to the code chunk to prevent printing of the R code that generated the
</div>
</div>
</div>
<script>
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function bootstrapStylePandocTables() {
  $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
  bootstrapStylePandocTables();
});

</script>
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  (function () {
    var script = document.createElement("script");
    script.type = "text/javascript";
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    document.getElementsByTagName("head")[0].appendChild(script);
  })();
</script>

</body></html>

更新: 会话信息((

> sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_Canada.1252  LC_CTYPE=English_Canada.1252    LC_MONETARY=English_Canada.1252
[4] LC_NUMERIC=C                    LC_TIME=English_Canada.1252    
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     
loaded via a namespace (and not attached):
 [1] ggrepel_0.6.5    Rcpp_0.12.14     rprojroot_1.2    digest_0.6.12    grid_3.4.0       plyr_1.8.4       backports_1.1.1 
 [8] gtable_0.2.0     magrittr_1.5     evaluate_0.10.1  scales_0.5.0     ggplot2_2.2.1    stringi_1.1.6    rlang_0.1.4     
[15] lazyeval_0.2.1   rmarkdown_1.7    tools_3.4.0      stringr_1.2.0    munsell_0.4.3    rsconnect_0.8.5  yaml_2.1.14     
[22] compiler_3.4.0   colorspace_1.3-2 htmltools_0.3.6  knitr_1.17       tibble_1.3.4    

我最初打算将其写为注释,但后来决定回答,因为长度,并且这种对R markdown的HTML输出的理解可能对其他用户有所帮助。

首先,目录链接已经是相对的,而不是像您所说的那样硬编码。如果您在rmarkdown::render("example.Rmd")之后查看输出文档的来源,您将看到...

例。马币

---
title: "###**Weekly Update**"
author: "#####Author"
date: "#####Report Date: `r Sys.Date()`  "
output: 
  html_document:
    toc: yes
    toc_depth: 5
---
#### **MY FIRST HEADER**  
This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see <http://rmarkdown.rstudio.com>.
##### **MY FIRST SUB-HEADER**  
When you click the **Knit** button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:
```{r cars}
summary(cars)
```
#### **MY SECOND HEADER**  
You can also embed plots, for example:

##### **MY SECOND SUB-HEADER**  
Note that the `echo = FALSE` parameter was added to the code chunk to prevent printing of the R code that generated the plot.

示例.html

<div class="fluid-row" id="header">
<h1 class="title toc-ignore"><h3 id="weekly-update"><strong>Weekly Update</strong></h3></h1>
<h4 class="author"><em><h5 id="author">Author</h5></em></h4>
<h4 class="date"><em><h5 id="report-date-2018-02-03">Report Date: 2018-02-03</h5></em></h4>
</div>
<div id="TOC">
<ul>
<li><a href="#my-first-header"><strong>MY FIRST HEADER</strong></a><ul>
<li><a href="#my-first-sub-header"><strong>MY FIRST SUB-HEADER</strong></a></li>
</ul></li>
<li><a href="#my-second-header"><strong>MY SECOND HEADER</strong></a><ul>
<li><a href="#my-second-sub-header"><strong>MY SECOND SUB-HEADER</strong></a></li>
</ul></li>
</ul>
</div>
<div id="my-first-header" class="section level4">
<h4><strong>MY FIRST HEADER</strong></h4>
<p>This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see <a href="http://rmarkdown.rstudio.com" class="uri">http://rmarkdown.rstudio.com</a>.</p>
<div id="my-first-sub-header" class="section level5">
<h5><strong>MY FIRST SUB-HEADER</strong></h5>
<p>When you click the <strong>Knit</strong> button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:</p>
<pre class="r"><code>summary(cars)</code></pre>
<pre><code>##      speed           dist       
##  Min.   : 4.0   Min.   :  2.00  
##  1st Qu.:12.0   1st Qu.: 26.00  
##  Median :15.0   Median : 36.00  
##  Mean   :15.4   Mean   : 42.98  
##  3rd Qu.:19.0   3rd Qu.: 56.00  
##  Max.   :25.0   Max.   :120.00</code></pre>
</div>
</div>
<div id="my-second-header" class="section level4">
<h4><strong>MY SECOND HEADER</strong></h4>
<p>You can also embed plots, for example:</p>
<div id="my-second-sub-header" class="section level5">
<h5><strong>MY SECOND SUB-HEADER</strong></h5>
<p>Note that the <code>echo = FALSE</code> parameter was added to the code chunk to prevent printing of the R code that generated the plot.</p>
</div>
</div>


</div>

在您的链接中,href 值指向部分 ID。在浏览器中,路径将是文件的位置,并将该部分作为后缀。

protocol://path/to/file/example.html#section

我无法重现您正在生成的内容,请将sessionInfo()的输出添加到您的问题中,让我们看看。

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