r语言 - Installing ggbiplot from github



我正在尝试从Github安装ggbiplot的开发版本。在安装过程中,我收到以下错误消息:

library(devtools)
install_github("ggbiplot", "vqv")

Installing github repo(s) ggbiplot/master from vqv
Installing ggbiplot.zip from https://github.com/vqv/ggbiplot/zipball
Installing ggbiplot
* checking for file 'C:UsersMuhammad YaseenAppDataLocalTempRtmpsx4n5uvqv-ggbiplot-2623d7c/DESCRIPTION' ... OK
* preparing 'ggbiplot':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'ggbiplot_0.5.tar.gz'
cygwin warning:
  MS-DOS style path detected: C:/Users/MUHAMM~1/AppData/Local/Temp/Rtmpsx4n5u/ggbiplot_0.5.tar.gz
  Preferred POSIX equivalent is: /cygdrive/c/Users/MUHAMM~1/AppData/Local/Temp/Rtmpsx4n5u/ggbiplot_0.5.tar.gz
  CYGWIN environment variable option "nodosfilewarning" turns off this warning.
  Consult the user's guide for more details about POSIX paths:
    http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
Warning: invalid package 'Yaseen/R/win-library/2.14'
Error: ERROR: cannot cd to directory 'C:/Users/Muhammad'
Error: Command failed (1)
In addition: Warning message:
running command '"C:/PROGRA~1/R/R-214~1.2/bin/i386/R" CMD INSTALL C:UsersMUHAMM~1AppDataLocalTempRtmpsx4n5u/ggbiplot_0.5.tar.gz --library=C:/Users/Muhammad Yaseen/R/win-library/2.14' had status 1 

任何解决这个问题的想法。提前感谢您的帮助和时间。

编辑

从Github下载后,也尝试了

install.packages("vqv-ggbiplot-2623d7c.tar.gz", repos=NULL, type="source")

它产生了这个错误信息

Installing package(s) into ‘C:/Users/Muhammad Yaseen/R/win-library/2.14’
(as ‘lib’ is unspecified)
Error in untar2(tarfile, files, list, exdir) : unsupported entry type 'g'
Warning messages:
1: running command 'C:/PROGRA~1/R/R-214~1.2/bin/i386/R CMD INSTALL -l "C:/Users/Muhammad Yaseen/R/win-library/2.14"   "vqv-ggbiplot-2623d7c.tar.gz"' had status 1 
2: In install.packages("vqv-ggbiplot-2623d7c.tar.gz", repos = NULL,  :
  installation of package ‘vqv-ggbiplot-2623d7c.tar.gz’ had non-zero exit status

这是因为Rlib路径中有一个空间:C:/Users/Muhammad Yasseen/R/win-library/2.14

查看第一个错误日志中的警告消息是如何的

running command '"C:/PROGRA~1/R/R-214~1.2/bin/i386/R" CMD INSTALL 
C:UsersMUHAMM~1AppDataLocalTempRtmpsx4n5u/ggbiplot_0.5.tar.gz
--library=C:/Users/Muhammad Yaseen/R/win-library/2.14' 
had status 1 

特别是--library=C:/Users/Muhammad Yaseen/R/win-library/2.14

这应该是--library="C:/Users/Muhammad Yaseen/R/win-library/2.14"来处理空间。

使用install.packages可以为您处理引号-查看您的第二条警告消息(当您使用install.packages时)是如何的

running command 'C:/PROGRA~1/R/R-214~1.2/bin/i386/R CMD INSTALL 
-l "C:/Users/Muhammad Yaseen/R/win-library/2.14"   
"vqv-ggbiplot-2623d7c.tar.gz"' had status 1 

-l "C:/Users/Muhammad Yasseen/R/win-library/2.14"的周围有引号,所以不会出现同样的错误。

我快速查看了install-github源代码,它通过构建了R CMD INSTALL命令

paste("CMD INSTALL ", built_path, " --library=", .libPaths()[1], sep="")

看看它如何在出现空格的情况下不用双引号将.libPaths()[1]括起来?我想这是你的问题。

至于修复方法,在git生成的tar文件上使用install.packages()时似乎出现了错误(如本文所述)。所以,你可以:

  • 将R库的位置更改为没有空格的位置
  • 解压缩.tar.gz文件(我不知道是什么软件在Windows上这样做),并从提取的目录而不是.tar.gz进行安装

你无法解压缩.tar.gz,因为它清理文件的速度比你抓取文件的速度快(我看到它出现并再次被删除)。如果我错了,请纠正我,但我也无法从github获得开发工具,原因相同:S

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