在rstudio上打开项目时，我收到以下警告：
Warning message:
renv 0.12.0 was loaded from project library, but renv 0.11.0 is recorded in lockfile.
Use `renv::record("renv@0.12.0")` to record this version in the lockfile.
Use `renv::restore(packages = "renv")` to install renv 0.11.0 into the project library.
运行renv::record("renv@0.12.0")时，我收到以下消息：
Error: no lockfile exists at path "~/Documents/GitHub/CIMMYT/renv.lock"
当运行renv::restore()时，我得到了这个：
* The library is already synchronized with the lockfile.
我假设有一个锁定文件，但它不在那个路径上，所以我在父目录上查找锁定文件。我的操作系统是Ubuntu 20.04
find . -type f -iname 'renv.lock'
但此文件夹下没有锁定文件。我在这里错过了什么？在谷歌上找不到任何有用的答案。
更新：renv::diagnostics()按要求
Diagnostics Report -- renv [0.12.0]
===================================
# Session Info =======================
R version 4.0.2 (2020-06-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_HK.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_HK.UTF-8 LC_COLLATE=en_HK.UTF-8
[5] LC_MONETARY=en_HK.UTF-8 LC_MESSAGES=en_HK.UTF-8
[7] LC_PAPER=en_HK.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_HK.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] gtools_3.8.2 here_0.1 adegenet_2.1.3 ade4_1.7-15
loaded via a namespace (and not attached):
[1] splines_4.0.2 shiny_1.5.0 expm_0.999-5 sp_1.4-2
[5] renv_0.12.0 LearnBayes_2.15.1 pillar_1.4.6 backports_1.1.9
[9] lattice_0.20-41 glue_1.4.2 digest_0.6.25 promises_1.1.1
[13] colorspace_1.4-1 htmltools_0.5.0 httpuv_1.5.4 Matrix_1.2-18
[17] plyr_1.8.6 pkgconfig_2.0.3 raster_3.3-13 gmodels_2.18.1
[21] purrr_0.3.4 xtable_1.8-4 scales_1.1.1 gdata_2.18.0
[25] later_1.1.0.1 tibble_3.0.3 mgcv_1.8-33 generics_0.0.2
[29] ggplot2_3.3.2 ellipsis_0.3.1 magrittr_1.5 crayon_1.3.4
[33] mime_0.9 deldir_0.1-29 nlme_3.1-149 MASS_7.3-53
[37] class_7.3-17 vegan_2.5-6 tools_4.0.2 lifecycle_0.2.0
[41] stringr_1.4.0 munsell_0.5.0 cluster_2.1.0 compiler_4.0.2
[45] e1071_1.7-3 tinytex_0.25 rlang_0.4.7 classInt_0.4-3
[49] units_0.6-7 grid_4.0.2 rstudioapi_0.11 igraph_1.2.5
[53] boot_1.3-25 gtable_0.3.0 codetools_0.2-16 DBI_1.1.0
[57] reshape2_1.4.4 R6_2.4.1 dplyr_1.0.2 fastmap_1.0.1
[61] seqinr_3.6-1 rprojroot_1.3-2 spdep_1.1-5 KernSmooth_2.23-17
[65] permute_0.9-5 ape_5.4-1 stringi_1.5.3 parallel_4.0.2
[69] Rcpp_1.0.5 vctrs_0.3.4 sf_0.9-6 spData_0.3.8
[73] tidyselect_1.1.0 xfun_0.17 coda_0.19-3
# Project ============================
Project path: "~/Documents/GitHub/CIMMYT"
# Status =============================
* This project has not yet been snapshotted -- 'renv.lock' does not exist.
The following package(s) are installed but not recorded in the lockfile:
_
utf8 [1.1.4]
clipr [0.7.0]
tidyselect [1.1.0]
lme4 [1.1-23]
FactoMineR [2.3]
maptools [1.0-2]
cpp11 [0.2.1]
sourcetools [0.1.7]
munsell [0.5.0]
units [0.6-7]
statmod [1.4.34]
withr [2.2.0]
colorspace [1.4-1]
highr [0.8]
knitr [1.29]
leaps [3.1]
rstudioapi [0.11]
ggsignif [0.6.0]
labeling [0.3]
farver [2.0.3]
rprojroot [1.3-2]
coda [0.19-3]
LearnBayes [2.15.1]
vctrs [0.3.4]
generics [0.0.2]
xfun [0.17]
adegenet [2.1.3]
R6 [2.4.1]
markdown [1.1]
RcppEigen [0.3.3.7.0]
isoband [0.2.2]
RcppArmadillo [0.9.900.3.0]
assertthat [0.2.1]
promises [1.1.1]
scales [1.1.1]
nnet [7.3-14]
gtable [0.3.0]
conquer [1.0.2]
processx [3.4.4]
rlang [0.4.7]
MatrixModels [0.4-1]
scatterplot3d [0.3-41]
rstatix [0.6.0]
selectr [0.4-2]
broom [0.7.0]
yaml [2.2.1]
reshape2 [1.4.4]
abind [1.4-5]
modelr [0.1.8]
backports [1.1.9]
httpuv [1.5.4]
spData [0.3.8]
gaston [1.5.6]
ggplot2 [3.3.2]
ellipsis [0.3.1]
raster [3.3-13]
RColorBrewer [1.1-2]
polynom [1.4-0]
Rcpp [1.0.5]
plyr [1.8.6]
base64enc [0.1-3]
progress [1.2.2]
classInt [0.4-3]
purrr [0.3.4]
ps [1.3.4]
prettyunits [1.1.1]
ggpubr [0.4.0]
openssl [1.4.2]
deldir [0.1-29]
viridis [0.5.1]
cowplot [1.1.0]
ggrepel [0.8.2]
haven [2.3.1]
cluster [2.1.0]
fs [1.5.0]
here [0.1]
factoextra [1.0.7]
tinytex [0.25]
magrittr [1.5]
data.table [1.13.0]
pixmap [0.4-11]
openxlsx [4.1.5]
SparseM [1.78]
gmodels [2.18.1]
reprex [0.3.0]
whisker [0.4]
matrixStats [0.56.0]
pkgload [1.1.0]
hms [0.5.3]
mime [0.9]
evaluate [0.14]
xtable [1.8-4]
pbkrtest [0.4-8.6]
rio [0.5.16]
jpeg [0.1-8.1]
readxl [1.3.1]
gridExtra [2.3]
testthat [2.3.2]
ellipse [0.4.2]
tibble [3.0.3]
KernSmooth [2.23-17]
crayon [1.3.4]
minqa [1.2.4]
htmltools [0.5.0]
segmented [1.2-0]
mgcv [1.8-33]
later [1.1.0.1]
spdep [1.1-5]
tidyr [1.1.2]
expm [0.999-5]
RcppParallel [5.0.2]
lubridate [1.7.9]
DBI [1.1.0]
corrplot [0.84]
praise [1.0.0]
dbplyr [1.4.4]
MASS [7.3-53]
sf [0.9-6]
boot [1.3-25]
sys [3.4]
Matrix [1.2-18]
ade4 [1.7-15]
car [3.0-9]
readr [1.3.1]
permute [0.9-5]
cli [2.0.2]
gdata [2.18.0]
igraph [1.2.5]
forcats [0.5.0]
pkgconfig [2.0.3]
flashClust [1.01-2]
foreign [0.8-80]
sp [1.4-2]
xml2 [1.3.2]
BH [1.72.0-3]
rematch [1.0.1]
rvest [0.3.6]
stringr [1.4.0]
callr [3.4.4]
digest [0.6.25]
vegan [2.5-6]
rmarkdown [2.3]
cellranger [1.1.0]
dendextend [1.14.0]
curl [4.3]
shiny [1.5.0]
gtools [3.8.2]
commonmark [1.7]
quantreg [5.67]
nloptr [1.2.2.2]
hierfstat [0.5-7]
lifecycle [0.2.0]
nlme [3.1-149]
jsonlite [1.7.1]
carData [3.0-4]
seqinr [3.6-1]
desc [1.2.0]
viridisLite [0.3.0]
askpass [1.1]
fansi [0.4.1]
pillar [1.4.6]
ggsci [2.9]
lattice [0.20-41]
fastmap [1.0.1]
httr [1.4.2]
pkgbuild [1.1.0]
glue [1.4.2]
zip [2.1.1]
png [0.1-7]
class [7.3-17]
stringi [1.5.3]
blob [1.2.1]
latticeExtra [0.6-29]
renv [0.12.0]
dplyr [1.0.2]
tidyverse [1.3.0]
e1071 [1.7-3]
ape [5.4-1]
Use `renv::snapshot()` to add these packages to your lockfile.
# Packages ===========================
This project has not yet been snapshotted: 'renv.lock' does not exist.
Library Source Lockfile Source Path Dependency
BH 1.72.0-3 CRAN <NA> <NA> [1] indirect
DBI 1.1.0 CRAN <NA> <NA> [1] indirect
FactoMineR 2.3 CRAN <NA> <NA> [1] indirect
KernSmooth 2.23-17 CRAN <NA> <NA> [2] indirect
LearnBayes 2.15.1 CRAN <NA> <NA> [1] indirect
MASS 7.3-53 CRAN <NA> <NA> [2] indirect
Matrix 1.2-18 CRAN <NA> <NA> [2] indirect
MatrixModels 0.4-1 CRAN <NA> <NA> [1] indirect
R6 2.4.1 CRAN <NA> <NA> [1] indirect
RColorBrewer 1.1-2 CRAN <NA> <NA> [1] indirect
Rcpp 1.0.5 CRAN <NA> <NA> [1] indirect
RcppArmadillo 0.9.900.3.0 CRAN <NA> <NA> [1] indirect
RcppEigen 0.3.3.7.0 CRAN <NA> <NA> [1] indirect
RcppParallel 5.0.2 CRAN <NA> <NA> [1] indirect
SparseM 1.78 CRAN <NA> <NA> [1] indirect
abind 1.4-5 CRAN <NA> <NA> [1] indirect
ade4 1.7-15 CRAN <NA> <NA> [1] indirect
adegenet 2.1.3 CRAN <NA> <NA> [1] direct
ape 5.4-1 CRAN <NA> <NA> [1] indirect
askpass 1.1 CRAN <NA> <NA> [1] indirect
assertthat 0.2.1 CRAN <NA> <NA> [1] indirect
backports 1.1.9 CRAN <NA> <NA> [1] indirect
base64enc 0.1-3 CRAN <NA> <NA> [1] indirect
blob 1.2.1 CRAN <NA> <NA> [1] indirect
boot 1.3-25 CRAN <NA> <NA> [2] indirect
broom 0.7.0 CRAN <NA> <NA> [1] indirect
callr 3.4.4 CRAN <NA> <NA> [1] indirect
car 3.0-9 CRAN <NA> <NA> [1] indirect
carData 3.0-4 CRAN <NA> <NA> [1] indirect
cellranger 1.1.0 CRAN <NA> <NA> [1] indirect
class 7.3-17 CRAN <NA> <NA> [2] indirect
classInt 0.4-3 CRAN <NA> <NA> [1] indirect
cli 2.0.2 CRAN <NA> <NA> [1] indirect
clipr 0.7.0 CRAN <NA> <NA> [1] indirect
cluster 2.1.0 CRAN <NA> <NA> [2] indirect
coda 0.19-3 CRAN <NA> <NA> [1] indirect
codetools 0.2-16 CRAN <NA> <NA> [2] <NA>
colorspace 1.4-1 CRAN <NA> <NA> [1] indirect
commonmark 1.7 CRAN <NA> <NA> [1] indirect
compiler <NA> <NA> <NA> <NA> [2] indirect
conquer 1.0.2 CRAN <NA> <NA> [1] indirect
corrplot 0.84 CRAN <NA> <NA> [1] indirect
cowplot 1.1.0 CRAN <NA> <NA> [1] indirect
cpp11 0.2.1 CRAN <NA> <NA> [1] indirect
crayon 1.3.4 CRAN <NA> <NA> [1] indirect
curl 4.3 CRAN <NA> <NA> [1] indirect
data.table 1.13.0 CRAN <NA> <NA> [1] indirect
datasets <NA> <NA> <NA> <NA> [2] indirect
dbplyr 1.4.4 CRAN <NA> <NA> [1] indirect
deldir 0.1-29 CRAN <NA> <NA> [1] indirect
dendextend 1.14.0 CRAN <NA> <NA> [1] indirect
desc 1.2.0 CRAN <NA> <NA> [1] indirect
digest 0.6.25 CRAN <NA> <NA> [1] indirect
dplyr 1.0.2 CRAN <NA> <NA> [1] direct
e1071 1.7-3 CRAN <NA> <NA> [1] indirect
ellipse 0.4.2 CRAN <NA> <NA> [1] indirect
ellipsis 0.3.1 CRAN <NA> <NA> [1] indirect
evaluate 0.14 CRAN <NA> <NA> [1] indirect
expm 0.999-5 CRAN <NA> <NA> [1] indirect
factoextra 1.0.7 CRAN <NA> <NA> [1] direct
fansi 0.4.1 CRAN <NA> <NA> [1] indirect
farver 2.0.3 CRAN <NA> <NA> [1] indirect
fastmap 1.0.1 CRAN <NA> <NA> [1] indirect
flashClust 1.01-2 CRAN <NA> <NA> [1] indirect
forcats 0.5.0 CRAN <NA> <NA> [1] indirect
foreign 0.8-80 CRAN <NA> <NA> [1] indirect
fs 1.5.0 CRAN <NA> <NA> [1] indirect
gaston 1.5.6 CRAN <NA> <NA> [1] indirect
gdata 2.18.0 CRAN <NA> <NA> [1] indirect
generics 0.0.2 CRAN <NA> <NA> [1] indirect
ggplot2 3.3.2 CRAN <NA> <NA> [1] direct
ggpubr 0.4.0 CRAN <NA> <NA> [1] indirect
ggrepel 0.8.2 CRAN <NA> <NA> [1] indirect
ggsci 2.9 CRAN <NA> <NA> [1] indirect
ggsignif 0.6.0 CRAN <NA> <NA> [1] indirect
glue 1.4.2 CRAN <NA> <NA> [1] indirect
gmodels 2.18.1 CRAN <NA> <NA> [1] indirect
grDevices <NA> <NA> <NA> <NA> [2] indirect
graphics <NA> <NA> <NA> <NA> [2] indirect
grid <NA> <NA> <NA> <NA> [2] indirect
gridExtra 2.3 CRAN <NA> <NA> [1] direct
gtable 0.3.0 CRAN <NA> <NA> [1] indirect
gtools 3.8.2 CRAN <NA> <NA> [1] direct
haven 2.3.1 CRAN <NA> <NA> [1] indirect
here 0.1 CRAN <NA> <NA> [1] direct
hierfstat 0.5-7 CRAN <NA> <NA> [1] direct
highr 0.8 CRAN <NA> <NA> [1] indirect
hms 0.5.3 CRAN <NA> <NA> [1] indirect
htmltools 0.5.0 CRAN <NA> <NA> [1] indirect
httpuv 1.5.4 CRAN <NA> <NA> [1] indirect
httr 1.4.2 CRAN <NA> <NA> [1] indirect
igraph 1.2.5 CRAN <NA> <NA> [1] indirect
isoband 0.2.2 CRAN <NA> <NA> [1] indirect
jpeg 0.1-8.1 CRAN <NA> <NA> [1] indirect
jsonlite 1.7.1 CRAN <NA> <NA> [1] indirect
knitr 1.29 CRAN <NA> <NA> [1] indirect
labeling 0.3 CRAN <NA> <NA> [1] indirect
later 1.1.0.1 CRAN <NA> <NA> [1] indirect
lattice 0.20-41 CRAN <NA> <NA> [2] direct
latticeExtra 0.6-29 CRAN <NA> <NA> [1] direct
leaps 3.1 CRAN <NA> <NA> [1] indirect
lifecycle 0.2.0 CRAN <NA> <NA> [1] indirect
lme4 1.1-23 CRAN <NA> <NA> [1] indirect
lubridate 1.7.9 CRAN <NA> <NA> [1] indirect
magrittr 1.5 CRAN <NA> <NA> [1] indirect
maptools 1.0-2 CRAN <NA> <NA> [1] indirect
markdown 1.1 CRAN <NA> <NA> [1] indirect
matrixStats 0.56.0 CRAN <NA> <NA> [1] indirect
methods <NA> <NA> <NA> <NA> [2] indirect
mgcv 1.8-33 CRAN <NA> <NA> [2] indirect
mime 0.9 CRAN <NA> <NA> [1] indirect
minqa 1.2.4 CRAN <NA> <NA> [1] indirect
modelr 0.1.8 CRAN <NA> <NA> [1] indirect
munsell 0.5.0 CRAN <NA> <NA> [1] indirect
nlme 3.1-149 CRAN <NA> <NA> [2] indirect
nloptr 1.2.2.2 CRAN <NA> <NA> [1] indirect
nnet 7.3-14 CRAN <NA> <NA> [2] indirect
openssl 1.4.2 CRAN <NA> <NA> [1] indirect
openxlsx 4.1.5 CRAN <NA> <NA> [1] indirect
parallel <NA> <NA> <NA> <NA> [2] indirect
pbkrtest 0.4-8.6 CRAN <NA> <NA> [1] indirect
permute 0.9-5 CRAN <NA> <NA> [1] indirect
pillar 1.4.6 CRAN <NA> <NA> [1] indirect
pixmap 0.4-11 CRAN <NA> <NA> [1] indirect
pkgbuild 1.1.0 CRAN <NA> <NA> [1] indirect
pkgconfig 2.0.3 CRAN <NA> <NA> [1] indirect
pkgload 1.1.0 CRAN <NA> <NA> [1] indirect
plyr 1.8.6 CRAN <NA> <NA> [1] indirect
png 0.1-7 CRAN <NA> <NA> [1] indirect
polynom 1.4-0 CRAN <NA> <NA> [1] indirect
praise 1.0.0 CRAN <NA> <NA> [1] indirect
prettyunits 1.1.1 CRAN <NA> <NA> [1] indirect
processx 3.4.4 CRAN <NA> <NA> [1] indirect
progress 1.2.2 CRAN <NA> <NA> [1] indirect
promises 1.1.1 CRAN <NA> <NA> [1] indirect
ps 1.3.4 CRAN <NA> <NA> [1] indirect
purrr 0.3.4 CRAN <NA> <NA> [1] indirect
quantreg 5.67 CRAN <NA> <NA> [1] indirect
raster 3.3-13 CRAN <NA> <NA> [1] indirect
readr 1.3.1 CRAN <NA> <NA> [1] indirect
readxl 1.3.1 CRAN <NA> <NA> [1] indirect
rematch 1.0.1 CRAN <NA> <NA> [1] indirect
renv 0.12.0 CRAN <NA> <NA> [1] <NA>
reprex 0.3.0 CRAN <NA> <NA> [1] indirect
reshape2 1.4.4 CRAN <NA> <NA> [1] indirect
rio 0.5.16 CRAN <NA> <NA> [1] indirect
rlang 0.4.7 CRAN <NA> <NA> [1] indirect
rmarkdown 2.3 CRAN <NA> <NA> [1] indirect
rpart 4.1-15 CRAN <NA> <NA> [2] <NA>
rprojroot 1.3-2 CRAN <NA> <NA> [1] indirect
rstatix 0.6.0 CRAN <NA> <NA> [1] indirect
rstudioapi 0.11 CRAN <NA> <NA> [1] indirect
rvest 0.3.6 CRAN <NA> <NA> [1] indirect
scales 1.1.1 CRAN <NA> <NA> [1] indirect
scatterplot3d 0.3-41 CRAN <NA> <NA> [1] indirect
segmented 1.2-0 CRAN <NA> <NA> [1] indirect
selectr 0.4-2 CRAN <NA> <NA> [1] indirect
seqinr 3.6-1 CRAN <NA> <NA> [1] indirect
sf 0.9-6 CRAN <NA> <NA> [1] indirect
shiny 1.5.0 CRAN <NA> <NA> [1] indirect
sourcetools 0.1.7 CRAN <NA> <NA> [1] indirect
sp 1.4-2 CRAN <NA> <NA> [1] indirect
spData 0.3.8 CRAN <NA> <NA> [1] indirect
spatial 7.3-12 CRAN <NA> <NA> [1] <NA>
spdep 1.1-5 CRAN <NA> <NA> [1] indirect
splines <NA> <NA> <NA> <NA> [2] indirect
[ reached 'max' / getOption("max.print") -- omitted 27 rows ]
[1]: /home/alex/Documents/GitHub/CIMMYT/renv/library/R-4.0/x86_64-pc-linux-gnu
[2]: /tmp/RtmpdZmmFV/renv-system-library
# User Profile =======================
[no user profile detected]
# Settings ===========================
List of 6
$ external.libraries : chr(0)
$ ignored.packages : chr(0)
$ package.dependency.fields: chr [1:3] "Imports" "Depends" "LinkingTo"
$ snapshot.type : chr "implicit"
$ use.cache : logi TRUE
$ vcs.ignore.library : logi TRUE
# Options ============================
List of 2
$ renv.consent: logi TRUE
$ renv.verbose: logi TRUE
# Environment Variables ==============
HOME = /home/alex
LANG = en_HK.UTF-8
R_LIBS = <NA>
R_LIBS_SITE = /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
R_LIBS_USER = /home/alex/Documents/GitHub/CIMMYT/renv/library/R-4.0/x86_64-pc-linux-gnu:/tmp/RtmpdZmmFV/renv-system-library
RENV_DEFAULT_R_ENVIRON = <NA>
RENV_DEFAULT_R_ENVIRON_USER = <NA>
RENV_DEFAULT_R_LIBS = <NA>
RENV_DEFAULT_R_LIBS_SITE = /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
RENV_DEFAULT_R_LIBS_USER = ~/R/x86_64-pc-linux-gnu-library/4.0
RENV_DEFAULT_R_PROFILE = <NA>
RENV_DEFAULT_R_PROFILE_USER = <NA>
RENV_PROJECT = /home/alex/Documents/GitHub/CIMMYT
# PATH ===============================
- /usr/local/sbin
- /usr/local/bin
- /usr/sbin
- /usr/bin
- /sbin
- /bin
- /usr/games
- /usr/local/games
- /snap/bin
- /usr/lib/rstudio/bin/postback
# Cache ==============================
There are a total of 166 package(s) installed in the renv cache.
Cache path: "~/.local/share/renv/cache/v5/R-4.0/x86_64-pc-linux-gnu"
再次锁定文件似乎不存在
我认为这最终是renv中的一个小错误。以下是我对正在发生的事情的猜测：
-
虽然此项目已初始化为
renv项目，但由于某些原因，它没有锁定文件。(也许调用renv::activate()是为了初始化renv而没有显式创建锁定文件？( -
该项目有一个
renv自动加载器；这是来自CCD_ 9处的脚本。该脚本被配置为加载renv 0.11.0。 -
加载项目时，
renv发现renv 0.12.0安装在项目库中，而不是预期的版本0.11.0。这将导致发出警告。(也许renv之前在该项目中更新过？(
因此，最终，这里的警告是误导性的——对renv 0.11.0的请求直接来自自动加载器，而不是来自锁定文件(它不存在(。至于为什么锁定文件不存在，我不确定——但这很可能意味着项目是通过renv::activate()初始化的，而不是通过renv::init()初始化的。
尽管如此，您可以通过renv::snapshot()安全地重新生成锁定文件。