我希望根据列'sample'、'Family'和'taxa'对我的分类注释(16S数据集)进行排序。简单地说，有两种样本类型;m3fair和m3NC，如果'Family'中的注释在两个样本类型中相同，我希望知道'taxa'列中唯一的ASV标识符。
例如，"Family"列中的注释"f__Beijerinckiaceae"在m3fair和m3NC两个样本中都存在。既然是这种情况，我想知道'f__Beijerinckiaceae'的所有三个注释的ASV分类群标识符，即2ca928ad9749bb9726c35d6528fefec1, bcc8b318ede81a8b211e7bdd1531baec和e31f3d32519dc9021ff790f87d76114c。
提前感谢!
> dput(example)
structure(list(taxa = structure(c(203L, 150L, 150L, 202L, 175L
), .Label = c("8c54f0af4445cdb1a6a36304a80b5a6d", "e6ff53b2675c61cf25ad3d79917b318e",
"38bbf752453c1c64f2e61966016d45c5", "903bcbbcb2ac130bb32d847ca7d191ed",
"7fc0ccbd86b09190f44369a934b3456c", "03c095b4239af5a7f63d39522b34186b",
"513c1bcb314fbf047f366f84a646c4a2", "0d3dca27868f7cfabbdbe1eb90657340",
"4b36fd18a35f063166412a83379bf797", "a6a6601f3a675697e92bc24d32042929",
"c46477febff8e68314f5baa81f4c082f", "f8753b9f13abb306b57aedce2cf6e7d0",
"230363069727610f8f1546cb314f2d1a", "100f4d61f5eaf8fb7369d9583b32ba46",
"69a70c343722f6851fc2191d4b3c3a1b", "0f222d9f6f748209e5d39cbbbb704c3e",
"06b8e39b562a2b31643b4f2c00d5dec7", "51141f001e298a5e44d99f7d7bdb78e2",
"56c98126dde3abb2d263088db55e12c8", "d8adf2a20249cefe6c627f9c17abb202",
"4e3acf7a1c4dddbc3f68097207cacb66", "fadd6b74d7cc847716a19679be001724",
"9815d07f1b564c9be5aab03db01608da", "bdd1f036611254ef872b334f7da681e6",
"028ecb2ed02be346c5f0347a9a3fba2a", "0310f41e594c49368dde5c5993a7a5d0",
"f510252f2eef402050f8169436cb4501", "3cb9f6500275fabe7c87a599a8c31749",
"f148144695ed0a63b976ea05243aba8c", "9ed070c666e12720a6bb6d3df1b09e45",
"e54bcf1c8ec24811e7c355b8d82fa59e", "c6608772f41c7d2202f2504190f2af8a",
"78732fda4b5a16d2bdddcd553953752c", "46271ec11fc9f127649526834a9fd805",
"dd0eaf58cb0b5378f465b4f59adf79d2", "585ab9ce79a8c90d675a66b9678b2137",
"4ef5dabd754e48c26c66c55b3615e69f", "bc3043f80a5fe9e5faa189fa7b050f61",
"f570f293e6b304776e5dce910a0b96e8", "432f8ae2390df378d7bab37a0026ff03",
"0d959da770b454f90e53757f8ab0893f", "0bc8e7f6bf04c1e745749edeb6d6628d",
"c78a82f200050febc553de67fffef578", "da36821195d462457b39c41aeb611ba1",
"2de266b1ffa8e9ec6383c98096caf8f0", "3845a467d4d557e0f035d045d0d86f70",
"630afd8b62db24d65410329610383a4f", "bfbf3b84b315e741c4345ebb43e2b9cc",
"c85df4c87e8960b573d8ae4bf7f65e15", "6c46511a89ec2a070fef341371ad02b7",
"6307431a0a1a9d90045dc5dccbfc5fe9", "0d1bf49752cd0c9211d28bc8577a9145",
"11630fb56d652f032964d7567e083d40", "04caec30dc35c55d62d69e6125cec2c1",
"854aeab59d32bfddbea09ed0571ca007", "f6436e7085d15342388e67b55d692fb6",
"ecbf086d6ccbe5e8c2a69d0afb144662", "da247df6fe91b74bf38d3ecc1c05b4b0",
"d4c4725af861d3daa18bddefb558cf50", "c06b07ff323a7b0bccf5d0e604b0afab",
"ec8bf881537838f56323ada7de070b19", "1d6f8731081df8944cd50ae875fb9b28",
"8101da5193e402ec2741419cd0515110", "381f3c0f833ce81483700d6dc0b940ef",
"d0484307102691e2482cb79f8784827c", "d0c9e10ee52d3c93502663df3328e2c6",
"2f09559bc1ffcc3ea06ae2766194920b", "3bb215c036a5b86e071708ce88665689",
"d8a6777829870b41d1544fb173608685", "10a4a0714d1b0063c37636f2ec22bbae",
"5740f0ff513cc2099d6beacec9336f45", "763f0806ad9068d1f4092259a970c925",
"50e96bbd1a8267119529843a1acb43a5", "500d6b485cef4c52aad211d6d6e6dbc7",
"4ea5683e2c2a183c11c45dc8fbd0c67c", "7e598ad34909a3fb8ff1623f1ede11a6",
"8659c05e82a2d1399cbc3fd26ab938e4", "9c886b1c9e3e2ec63e0dbbd085996334",
"8da02c7114ba0d9ee40312926e037a8f", "5cb28bd0b2eea6847a6328712217c141",
"a049763053c277b16c2a318f41eb23b4", "0ce84d495f51f4e5997076bddebe65a5",
"576fd9e4a384474af1d78a589118b213", "e74212c56f84c309729e86ad3b126716",
"095249b545f554a6a66a4e378eed9c23", "12f69cdd5a43e9c04fa76fe778493dbc",
"6eaaffd8bd37b95220a3bebdf503be32", "78d6bb358b0ec0c94a8caa7c7a28171c",
"57799c0748039c006705cb9c46ace954", "b335608a8c2309ce02373311b7737b55",
"ff4bc2548279113788b4bf164d2db0d0", "254ba9ed4527552e061da0653ae95392",
"2480590c44af81ddbc2f34d381864702", "e4b865c957d0d23766a0e8e87f6d153d",
"f98cc8f203873fd4078c589a6332e72e", "4eb88a4d445e0987c56d0197301bd4e7",
"c5f7ff7e9d319f880b2c41c4ce6d52de", "15e687c6e5701e1b3b10fc0223d96c59",
"5c3138b23334b1d6b4bf3943db5eae74", "e22be263cc3a006762b66711df3d6a23",
"e209a5a9add3e7a68f273a2f17942555", "b19efe6ae9dabd64b44e12f4f1b88643",
"ea0c2938cf670cfcec8bd497e1767ae8", "ea794ad075da6b9b427ecf13244a6e97",
"414cb56f046e21beb8cf72b9285ab2bd", "6f318147a66f5851564f04aba9092057",
"32b53bb775ee918b4b75ee4c87ecdb55", "f467d11f3c1a16ea55e2ab7ab88a85c2",
"dfb69af34af0dcc91f9596d47ea6882b", "db4c51d23607a40db2843c49a38ee271",
"02047d2e2da6d0e73846b63774619e77", "cb2fe0146e2fbcb101050edb996a0ee2",
"4b88b52dd068a7d432309dec77813d29", "d2da0518d0f3ac5dd8d7df770389fee5",
"5f86daf7f135fee1745dba9e874fe013", "9a2740e3bc27419a895dfb6e0b986854",
"3a2e70f61b311dc0cd2261732a9cb627", "313402c6104b2605890eda8d9fa89fba",
"e33cca4021036f12a70132aed9f9c52d", "d29fe3c70564fc0f69f2c03e0d1e5561",
"eb5f185c6ab0e5f7953654a2a5d12ce7", "89fa7b79c6b2c5019ca0d1bc2f509f0b",
"fcd4f95c05b868060121ff709085bf21", "7c14b01c89686b9e327fc7d3dee3af30",
"0161e22acf37955da1e4b8bafe9f54e6", "ac70e87927f15bf812e8cad1cd9003cb",
"bfbed36e63b69fec4627424163d20118", "3f0ecac3d878543cf67dae94e6309453",
"0b607a251255e7aa0ef0c4e242b3e87c", "3d28edbfcb341fbf3d2fd87056633569",
"fa2102f32f8f05f458f0833df8c78500", "3b588d7e9f41b7e5ea9539d52ccda834",
"646eeb6a205282fe7afb5d73d1af30be", "a3e8652354170f4ddc4b96f65ff42aaf",
"09b2620539f4861b9b2e6d271d4bb319", "a301810850607af459b6de0b8a6dfcfb",
"ee2babc92e666c2593d83df7ad086362", "1054403160f296f2f44fbdf81f31b32c",
"b62d8ace7310a137d1ff25156b20b881", "4043cc4801dcf236434002ac21298d76",
"feb46b2df4fc3958ccd80e768b79502b", "c2dfc10913176eda134cd88ed68e0a72",
"668584d4ca79707c62229c2b9a520634", "b48eec9298fe8ed0fdf2e968ee6cc4af",
"a75e4ea5f1add4aa39f660dd13084fd0", "2a8bd6428138528c12a10c06b52954db",
"e6922be77906565e6bae2a89da15d175", "e21e4030f895965d1846404a94ebcb11",
"d03ede724dcc3efd39db449fd5bced6e", "6639f71cd3265109c47115f4a5913958",
"8c08537b3e07c84c47eb29e4de593a02", "8c1456c47986f85320cdfe1c515ffb4c",
"3e00fb174071bfc76c017d666f43af65", "1f70bd0eeef30f2afcd750b70f7e7066",
"c1efd1322ab8cef2a84ace9e85e37467", "b18b389447d758e7cb173b4b4f2ad960",
"9af604229897c70de75a7740fe13e80d", "c9a7a8206f0d8eda7576e0bb44b058a7",
"ae65f0c53471069e8a19b8d38ffcd3e7", "b19b302de47cc21f8f4cf1464a10b2b3",
"8b9a8bca0a4a02cde893f0bf550e4b68", "2492e30becb2716ccd9557e27900a56d",
"997d9c1623cbaab34cdb0668950d5a08", "1c77f5f31494131fcbb21fd9f52c7618",
"bfbd7ffe99a84ab5d92dc545d1a5a3c7", "e91fee71ae5261d22530ee9afa22dae5",
"59988344137e8b4b1c56e5f886bc294d", "3a4d3ac6f2aeecdba4936b18e28d04e5",
"e48dc10d2f3df1f6795902f9d53625ee", "9259758b55aa71398e2cafd0db077fcd",
"61f0d618a9ccef240bf7f6b65ac3cd64", "955d8fcbb35e8bc04c8df0c6aae34d34",
"35a7084609b22c35a5162738624ef6d0", "bc2942a64ee2fa191613f41f7e0134df",
"e31f3d32519dc9021ff790f87d76114c", "594a57ff90b7936ce2cd8036ad681cef",
"a64788b07ff4d444a278dbdd45b9cda4", "ef1e892b6e84a8b51d80eb7d6037167f",
"ce036ee8825f6a2f95a01b9488144638", "5a4979556bf389cd5ba711b146417234",
"ac809fd715cced98911f73f1dfb1ffb9", "e206fe2391a57543027d38d4ab4355e5",
"780d57e7f37aba0e43ea58166978f258", "9995306be33bb6a067fbd14fd12ab247",
"d867858df4524fe62a46ed814274aaa4", "12c0941446564e8d3cb6c3fb07bebed8",
"d174fd25211450a7f7b6dbae6db61e2c", "491e6acf93836613376f546052749de2",
"be94715fa59eebb39dae561eee3e2f3a", "21bc9a5af6203656e6d1066a13121fb0",
"0b925631436d3775231b60f9d0011cae", "47c2b089e44e1baab72de03674f2526e",
"c4d8bbf6d24dd9c56321087cc3936763", "147f2c2c24c7e1b1c371d42a36816214",
"7c999fc012772119e945f6e87a941e92", "3423114aff9da85e4989c2c268769033",
"82eab43c427e6afb5bf1fd10be00cc4b", "f637087afddcd520f0691150409f4d26",
"54edafdb5df25d839fa4696a3d8a08d9", "bfa4fe32a85423441482e307c7ed5e65",
"34d0e4410278fca5bbc2eac3de76feac", "bcc8b318ede81a8b211e7bdd1531baec",
"2ca928ad9749bb9726c35d6528fefec1", "959a178855242ad3833af85d38ccff45",
"3830e37a7ac6cf83a20dc9b8f225bb69", "9205f49b7a5898bf9dec93aa53ff96ec",
"bf2b830db0f89f72b4bf68394b70fbf5", "cba5161b7eb1f07a14ca874577e69cf3",
"179e215ab39a0a69ca15100615efae28", "beb5157c4f4ffcb17a5aa73fb6efd009",
"38401e17915bca5aab62c763930d1cfb", "1fc7138b0d9568c4588eb34dabc430d3",
"d2c5f354da4c7a6e78626761b1801770", "68089dfb5a592ef9b73c307c746a940e",
"f8e8cca8fe936d9be35ed4fcf790d35b", "e68f3ead96583e125709c8a5ecf20a63",
"06b48070c8d8e4ad997399e958871cea", "aff65597908099c9ee322aff6bec0a68",
"c802baf89ae3088ec5027d645223e3d1", "59afa99ca520b0db55db192cf8be4edb",
"e131d6b9e4f997788460a450a69c3a99", "1b448e00c078f81e49a61933072345d2",
"0f48376fe94d49cef9a1ee1b46af7a4a", "79e9e337b10e2d298bb1b3bde946782d",
"1868b3eae7d694c939f6ee777c98ee82", "909755d7142ea53c7f61c97c3586f26c",
"c1bee78e8c05c7d1abd7122bff925e54", "3cdd97ba69a504117de24626ba790e96",
"bfd74cfd3e6c2b27cffc14334ee55878", "e2603d057e6cc94b2b3c774e5b24c09c",
"a7b2fd6bf0b1c028de90c11becdc1b39", "8bf361e85f0f9dbff5b9d6951fdae8c6",
"0c7b675ddf75b3a6ad648b004352b8c1", "f3ed29d9b4cd4e1ea7861fbe19314125",
"4aafbcb8ea0c9be6130d630345116249", "1d926e22515426e147f62e2d27fb25d5",
"6357497de4b956c00e393b9cbebaf228", "c8c6649cf27d3428a978248cb233b4ea",
"6013a4618dd16c1f100b084d722a817d", "fd188dccbbfa7e8d7aa3b6abe7fe59c4",
"c04b4c2c12d6408b4e741b3b91e91354", "4a43d5d77936e5dc6536931101c8d814",
"55982fe768843d5432c485e19f3ca7ae", "498128a80a796620b238d8ad5cd1d2f9",
"8c2d1b95d59fa2a627dd63d7a36c7483", "2ea78aa082eeffffc40ad0ac7e84dbb8",
"b8b381bb5c8bfaf50f1916a102161d01", "fe6a40c9234f9a57e1db10d0d87e3fa0",
"71727d41e7a3452a196977be7f013cb0"), class = "factor"), sample = c("m3ofair",
"m3NC", "m3ofair", "m3NC", "m3NC"), value = c(0.00110121133246571,
0, 0.00200220242266493, 0.00943847890021202, 0), Kingdom = structure(c(2L,
2L, 2L, 2L, 2L), .Label = c("d__Archaea", "d__Bacteria"), class = "factor"),
Phylum = structure(c(15L, 15L, 15L, 15L, 15L), .Label = c("p__Acidobacteriota",
"p__Actinobacteriota", "p__Armatimonadota", "p__Bacteroidota",
"p__Chloroflexi", "p__Cyanobacteria", "p__Deinococcota",
"p__Desulfobacterota", "p__Firmicutes", "p__Fusobacteriota",
"p__Gemmatimonadota", "p__Myxococcota", "p__Patescibacteria",
"p__Planctomycetota", "p__Proteobacteria", "p__SAR324_clade(Marine_group_B)",
"p__Synergistota", "p__Thermoplasmatota", "p__Verrucomicrobiota",
"p__WPS-2"), class = "factor"), Class = structure(c(4L, 4L,
4L, 4L, 4L), .Label = c("c__Acidimicrobiia", "c__Acidobacteriae",
"c__Actinobacteria", "c__Alphaproteobacteria", "c__Bacilli",
"c__Bacteroidia", "c__Chloroflexia", "c__Clostridia", "c__Coriobacteriia",
"c__CPR2", "c__Cyanobacteriia", "c__Deinococci", "c__Desulfitobacteriia",
"c__Desulfotomaculia", "c__Fimbriimonadia", "c__Fusobacteriia",
"c__Gammaproteobacteria", "c__Gemmatimonadetes", "c__KD4-96",
"c__Ktedonobacteria", "c__Myxococcia", "c__Phycisphaerae",
"c__Planctomycetes", "c__Polyangia", "c__Rhodothermia", "c__SAR324_clade(Marine_group_B)",
"c__Sericytochromatia", "c__Synergistia", "c__Syntrophia",
"c__Thermoanaerobacteria", "c__Thermoanaerobaculia", "c__Thermoleophilia",
"c__Thermoplasmata", "c__TK10", "c__Verrucomicrobiae", "c__Vicinamibacteria",
"c__WPS-2"), class = "factor"), Order = structure(c(72L,
7L, 7L, 72L, 72L), .Label = c("o__Acetobacterales", "o__Acidobacteriales",
"o__Actinomarinales", "o__Actinomycetales", "o__Alteromonadales",
"o__Arctic97B-4_marine_group", "o__Azospirillales", "o__Bacillales",
"o__Bacteroidales", "o__Balneolales", "o__Bifidobacteriales",
"o__Burkholderiales", "o__C0119", "o__Caulobacterales", "o__Chitinophagales",
"o__Chthoniobacterales", "o__Clostridia", "o__Clostridiales",
"o__Corynebacteriales", "o__CPR2", "o__Cyanobacteriales",
"o__Cytophagales", "o__Deinococcales", "o__Desulfitobacteriales",
"o__Desulfotomaculales", "o__Elsterales", "o__Enterobacterales",
"o__Eubacteriales", "o__Fimbriimonadales", "o__Flavobacteriales",
"o__Frankiales", "o__Fusobacteriales", "o__Gaiellales", "o__Gemmatales",
"o__Gemmatimonadales", "o__Haliangiales", "o__Halothiobacillales",
"o__IMCC26256", "o__Isosphaerales", "o__KD4-96", "o__Kiloniellales",
"o__Kineosporiales", "o__Ktedonobacterales", "o__Lachnospirales",
"o__Lactobacillales", "o__Legionellales", "o__Marine_Group_II",
"o__Methylococcales", "o__Micrococcales", "o__Micromonosporales",
"o__Micropepsales", "o__Microtrichales", "o__Myxococcales",
"o__Nitriliruptorales", "o__Nitrococcales", "o__Nitrosococcales",
"o__Oceanospirillales", "o__OPB41", "o__Oscillospirales",
"o__Paenibacillales", "o__Parvibaculales", "o__PeM15", "o__Peptostreptococcales-Tissierellales",
"o__Phycisphaerales", "o__Pirellulales", "o__Polyangiales",
"o__Propionibacteriales", "o__Proteinivoracales", "o__Pseudomonadales",
"o__Pseudonocardiales", "o__Puniceispirillales", "o__Rhizobiales",
"o__Rhodobacterales", "o__Rhodospirillales", "o__Rhodothermales",
"o__Rickettsiales", "o__Salinisphaerales", "o__SAR324_clade(Marine_group_B)",
"o__SAR86_clade", "o__Sericytochromatia", "o__Solibacterales",
"o__Solirubrobacterales", "o__Sphingobacteriales", "o__Sphingomonadales",
"o__Staphylococcales", "o__Streptomycetales", "o__Streptosporangiales",
"o__Synechococcales", "o__Synergistales", "o__Syntrophales",
"o__Thalassobaculales", "o__Thermales", "o__Thermoanaerobacterales",
"o__Thermoanaerobaculales", "o__Thermomicrobiales", "o__Tistrellales",
"o__TK10", "o__Vicinamibacterales", "o__WPS-2", "o__Xanthomonadales"
), class = "factor"), Family = structure(c(17L, 13L, 13L,
17L, 17L), .Label = c("f__67-14", "f__Acetobacteraceae",
"f__Acidobacteriaceae_(Subgroup_1)", "f__Actinomarinaceae",
"f__Actinomycetaceae", "f__Aerococcaceae", "f__Alcaligenaceae",
"f__Alcanivoracaceae1", "f__Algiphilaceae", "f__Alkalibacteraceae",
"f__Anaeromyxobacteraceae", "f__Arctic97B-4_marine_group",
"f__Azospirillaceae", "f__Bacillaceae", "f__Bacteroidetes_vadinHA17",
"f__Balneolaceae", "f__Beijerinckiaceae", "f__Beutenbergiaceae",
"f__Bifidobacteriaceae", "f__Bogoriellaceae", "f__Brevibacteriaceae",
"f__C0119", "f__Carnobacteriaceae", "f__Caulobacteraceae",
"f__Cellulomonadaceae", "f__Chitinophagaceae", "f__Chroococcidiopsaceae",
"f__Chthoniobacteraceae", "f__Clostridiaceae", "f__Comamonadaceae",
"f__Corynebacteriaceae", "f__CPR2", "f__Crocinitomicaceae",
"f__Cyanobiaceae", "f__Cyclobacteriaceae", "f__Deinococcaceae",
"f__Demequinaceae", "f__Dermabacteraceae", "f__Dermacoccaceae",
"f__Desulfitobacteriaceae", "f__Desulfotomaculales", "f__Devosiaceae",
"f__Dietziaceae", "f__Dysgonomonadaceae", "f__Endozoicomonadaceae",
"f__Enterobacteriaceae", "f__Eubacteriaceae", "f__Family_III",
"f__Fimbriimonadaceae", "f__Flavobacteriaceae", "f__Fodinicurvataceae",
"f__Frankiaceae", "f__Fusobacteriaceae", "f__Geminicoccaceae",
"f__Gemmataceae", "f__Gemmatimonadaceae", "f__Geodermatophilaceae",
"f__Haliangiaceae", "f__Halomonadaceae", "f__Halorhodospiraceae",
"f__Hungateiclostridiaceae", "f__Hymenobacteraceae", "f__Hyphomicrobiaceae",
"f__Hyphomonadaceae", "f__Idiomarinaceae", "f__IMCC26256",
"f__Intrasporangiaceae", "f__Isosphaeraceae", "f__JG30-KF-CM45",
"f__Jonesiaceae", "f__Kangiellaceae", "f__KD4-96", "f__Kineosporiaceae",
"f__Ktedonobacteraceae", "f__Labraceae", "f__Lachnospiraceae",
"f__Lactobacillaceae", "f__Legionellaceae", "f__Marine_Group_II",
"f__Marinilabiliaceae", "f__Marinobacteraceae", "f__Marinococcaceae",
"f__Methylomonadaceae", "f__Methylophagaceae", "f__Methylophilaceae",
"f__Methylopilaceae", "f__Microbacteriaceae", "f__Micrococcaceae",
"f__Micromonosporaceae", "f__Micropepsaceae", "f__Microscillaceae",
"f__Moraxellaceae", "f__Morganellaceae", "f__Mycobacteriaceae",
"f__Myxococcaceae", "f__Nakamurellaceae", "f__Nitriliruptoraceae",
"f__Nitrosomonadaceae", "f__Nocardiaceae", "f__Nocardioidaceae",
"f__Nocardiopsaceae", "f__Nostocaceae", "f__Oceanibaculaceae",
"f__OPB41", "f__Oscillospiraceae", "f__Oxalobacteraceae",
"f__Paenibacillaceae", "f__Parvibaculaceae", "f__PeM15",
"f__Peptostreptococcales-Tissierellales", "f__Phaselicystidaceae",
"f__Phycisphaeraceae", "f__Pirellulaceae", "f__Planococcaceae",
"f__Prevotellaceae", "f__Prolixibacteraceae", "f__Promicromonosporaceae",
"f__Proteinivoracales", "f__Pseudomonadaceae", "f__Pseudonocardiaceae",
"f__Rhizobiaceae", "f__Rhizobiales_Incertae_Sedis", "f__Rhodobacteraceae",
"f__Rhodobiaceae", "f__Rhodothermaceae", "f__Rickettsiaceae",
"f__Ruminococcaceae", "f__S25-593", "f__Salisediminibacteriaceae",
"f__SAR116_clade", "f__SAR324_clade(Marine_group_B)", "f__SAR86_clade",
"f__SC-I-84", "f__Sedimentibacteraceae", "f__Sericytochromatia",
"f__Solibacteraceae", "f__Solirubrobacteraceae", "f__Sphingobacteriaceae",
"f__Sphingomonadaceae", "f__Spirosomaceae", "f__Staphylococcaceae",
"f__Stappiaceae", "f__Streptococcaceae", "f__Streptomycetaceae",
"f__Streptosporangiaceae", "f__Synergistaceae", "f__Syntrophaceae",
"f__Syntrophobotulaceae", "f__Thalassospiraceae", "f__Thermaceae",
"f__Thermoanaerobaculaceae", "f__Thermotaleaceae", "f__Thioalkalibacteraceae",
"f__Tistrellaceae", "f__TK10", "f__TRA3-20", "f__uncultured",
"f__Vicinamibacteraceae", "f__Weeksellaceae", "f__WPS-2",
"f__Xanthobacteraceae", "f__Xanthomonadaceae"), class = "factor"),
Genus = structure(c(125L, 28L, 28L, 125L, NA), .Label = c("g__67-14",
"g__Acetobacterium", "g__Acidiphilium", "g__Acinetobacter",
"g__Actinomyces", "g__Actinotalea", "g__Advenella", "g__Aerococcus",
"g__Alcanivorax", "g__Algiphilus", "g__Algoriphagus", "g__Aliidiomarina",
"g__Aliihoeflea", "g__Aliterella", "g__Alkalibacter", "g__Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium",
"g__Altererythrobacter", "g__Amorphus", "g__Amycolatopsis",
"g__Anaerobacillus", "g__Anaerobranca", "g__Anaeromyxobacter",
"g__Aquibacillus", "g__Arctic97B-4_marine_group", "g__Arenimonas",
"g__Arthrobacter", "g__Aureimonas", "g__Azospirillum", "g__Bacillus",
"g__Bacteroidetes_vadinHA17", "g__Bauldia", "g__Bifidobacterium",
"g__Blastococcus", "g__Blastopirellula", "g__Bosea", "g__Brachybacterium",
"g__Bradyrhizobium", "g__Brevibacterium", "g__Brevundimonas",
"g__C0119", "g__Candidatus_Actinomarina", "g__Candidatus_Alysiosphaera",
"g__Candidatus_Solibacter", "g__Candidatus_Udaeobacter",
"g__Cecembia", "g__Chromohalobacter", "g__Chryseobacterium",
"g__Chthoniobacter", "g__Citricoccus", "g__Cloacibacterium",
"g__Clostridium_sensu_stricto_9", "g__Conexibacter", "g__Corynebacterium",
"g__CPR2", "g__Craurococcus-Caldovatus", "g__Curtobacterium",
"g__Dehalobacter", "g__Deinococcus", "g__Demequina", "g__Dermacoccus",
"g__Desulfohalotomaculum", "g__Desulfosporosinus", "g__Devosia",
"g__Dietzia", "g__DSSD61", "g__Dyadobacter", "g__Egicoccus",
"g__Ellin6067", "g__Endozoicomonas", "g__Enhydrobacter",
"g__Ercella", "g__Escherichia-Shigella", "g__Faecalibacterium",
"g__Fermentimonas", "g__Fimbriiglobus", "g__Fimbriimonadaceae",
"g__Finegoldia", "g__Flaviflexus", "g__Flavobacterium", "g__Fluviicola",
"g__Fusicatenibacter", "g__Fusobacterium", "g__Gardnerella",
"g__Gemmatimonas", "g__Geobacillus", "g__Georgenia", "g__Glutamicibacter",
"g__Gracilibacillus", "g__Gracilimonas", "g__Guyparkeria",
"g__Haematobacter", "g__Haliangium", "g__Halolactibacillus",
"g__Halomonas", "g__Henriciella", "g__HIMB11", "g__HSB_OF53-F07",
"g__Hymenobacter", "g__Hyphomicrobium", "g__IMCC26256", "g__Janibacter",
"g__Jatrophihabitans", "g__JCM_18997", "g__Jeotgalibacillus",
"g__JG30-KF-CM45", "g__JG30a-KF-32", "g__JGI-0000079-D21",
"g__Jiella", "g__Jonesia", "g__KD4-96", "g__Kineococcus",
"g__Labrys", "g__Lactobacillus", "g__Lawsonella", "g__Leeuwenhoekiella",
"g__Legionella", "g__Marine_Group_II", "g__Marinilabiliaceae",
"g__Marinobacter", "g__Marinococcus", "g__Martelella", "g__Massilia",
"g__Meiothermus", "g__Methylobacillus", "g__Methylobacterium-Methylorubrum",
"g__Methylophaga", "g__Methylotenera", "g__Micrococcus",
"g__Microvirga", "g__Modestobacter", "g__Mucilaginibacter",
"g__Muricauda", "g__Mycobacterium", "g__Nakamurella", "g__Nesterenkonia",
"g__Nitratireductor", "g__Nitriliruptor", "g__Nitriliruptoraceae",
"g__Nocardia", "g__Nocardioides", "g__Nocardiopsis", "g__Novosphingobium",
"g__NS5_marine_group", "g__Oceanibaculum", "g__Oceanobacillus",
"g__OPB41", "g__Oricola", "g__Ornithinimicrobium", "g__Oryzihumus",
"g__P3OB-42", "g__Paenibacillus", "g__Paludisphaera", "g__Paracoccus",
"g__Paraliobacillus", "g__Parvibaculum", "g__Patulibacter",
"g__Pediococcus", "g__Pedomicrobium", "g__Pelagibacterium",
"g__Pelotomaculum", "g__PeM15", "g__Phaselicystis", "g__Phenylobacterium",
"g__Pir4_lineage", "g__Polaromonas", "g__Prevotella", "g__Prochlorococcus_MIT9313",
"g__Promicromonospora", "g__Proteiniclasticum", "g__Pseudolabrys",
"g__Pseudomonas", "g__Pseudonocardia", "g__Psychrobacter",
"g__Psychroglaciecola", "g__Pusillimonas", "g__Quadrisphaera",
"g__Rhodococcus", "g__Rhodopirellula", "g__Roseisolibacter",
"g__Roseovarius", "g__Rubrivirga", "g__Rummeliibacillus",
"g__S25-593", "g__Saccharomonospora", "g__Saccharopolyspora",
"g__Salegentibacter", "g__Salimesophilobacter", "g__Salinicola",
"g__Salipaludibacillus", "g__SAR116_clade", "g__SAR324_clade(Marine_group_B)",
"g__SAR86_clade", "g__SC-I-84", "g__Scytonema_UTEX_2349",
"g__Sedimentibacter", "g__Sediminibacterium", "g__Sericytochromatia",
"g__SM1A02", "g__Solirubrobacter", "g__Sphingobium", "g__Sphingomonas",
"g__Sporobacter", "g__Staphylococcus", "g__Stappia", "g__Streptococcus",
"g__Streptomyces", "g__Subgroup_10", "g__Synechococcus_CC9902",
"g__Syntrophus", "g__Terrabacter", "g__Thalassospira", "g__Thermoanaerobacterium",
"g__Thermopolyspora", "g__Thermus", "g__Tistrella", "g__TK10",
"g__TRA3-20", "g__uncultured", "g__Vicinamibacteraceae",
"g__Virgibacillus", "g__WCHB1-32", "g__WPS-2", "g__Xanthobacter"
), class = "factor"), Species = structure(c(NA, 55L, 55L,
NA, NA), .Label = c("s__Acetobacteraceae_bacterium", "s__Acinetobacter_venetianus",
"s__Actinomycetales_bacterium", "s__Alcanivorax_pacificus",
"s__Amorphus_suaedae", "s__Aquibacillus_sp.", "s__Bacillus_alcalophilus",
"s__bacterium_Ellin6515", "s__bacterium_enrichment", "s__bacterium_QTYC46b",
"s__Bifidobacterium_bifidum", "s__Blastopirellula_cremea",
"s__Brevibacterium_samyangense", "s__Cellulomonas_sp.", "s__Corynebacterium_glaucum",
"s__Deinococcus_geothermalis", "s__Desulfohalotomaculum_halophilum",
"s__Desulfosporosinus_youngiae", "s__Endozoicomonas_acroporae",
"s__Ercella_succinigenes", "s__Flavobacterium_qiangtangense",
"s__Fluviicola_sp.", "s__Gardnerella_vaginalis", "s__iron-reducing_bacterium",
"s__Jonesia_denitrificans", "s__Lactobacillus_iners", "s__Leeuwenhoekiella_sp.",
"s__marine_sediment", "s__Mesorhizobium_sp.", "s__metagenome",
"s__Nitriliruptor_alkaliphilus", "s__Oryzihumus_terrae",
"s__Pedomicrobium_ferrugineum", "s__Phyllobacteriaceae_bacterium",
"s__planctomycete_str.", "s__Prevotella_histicola", "s__Prevotella_pallens",
"s__Psychrobacter_pulmonis", "s__Rhodobacteraceae_bacterium",
"s__Rhodococcus_sp.", "s__rock_porewater", "s__Saccharopolyspora_rectivirgula",
"s__Sedimentibacter_acidaminivorans", "s__Sphingomonas_metalli",
"s__Streptomyces_specialis", "s__Streptosporangiaceae_str.",
"s__Tistrella_bauzanensis", "s__Triticum_aestivum", "s__uncultured_Acidobacteriaceae",
"s__uncultured_actinobacterium", "s__uncultured_Actinomycetales",
"s__uncultured_Alcaligenes", "s__uncultured_Anaerobacillus",
"s__uncultured_Anaerolineaceae", "s__uncultured_Azospirillum",
"s__uncultured_bacterium", "s__uncultured_Bacteroidetes",
"s__uncultured_Chloroflexi", "s__uncultured_Conexibacter",
"s__uncultured_cyanobacterium", "s__uncultured_Ferrimicrobium",
"s__uncultured_Fimbriimonas", "s__uncultured_Ktedobacteria",
"s__uncultured_Methylocystaceae", "s__uncultured_Nitriliruptorales",
"s__uncultured_planctomycete", "s__uncultured_Porphyromonadaceae",
"s__uncultured_prokaryote", "s__uncultured_Rhodospirillaceae",
"s__uncultured_soil"), class = "factor")), row.names = c(86L,
209L, 210L, 333L, 431L), class = "data.frame")
假设您正在处理一个名为physeq的phyloseq对象，您可以执行以下操作:
- 将OTU表聚合到Family级别:
p <- tax_glom(physeq, "Family")
- 然后您可以选择两个样本中存在的家族:
families <- tax_table(p)[otu_table(p)[,"m3ofair"] > 0 & otu_table(p)[,"m3NC"] > 0, "Family"]
- 现在您可以选择asv与您想要的家庭:
pout <- prune_taxa(tax_table(physeq)[, "Family"] %in% families, physeq)